BGSU RNA Site //

Equivalence class NR_4.0_90840.4 Current

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17MDL|1|E (rep)Selenocysteine transfer RNARNA (90-MER)synthetic constructSyntheticRF01852High-resolution crystal structure of human SepSecS-tRNASec complexX-RAY DIFFRACTION2.322022-11-09
24ZDO|1|ESelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)X-RAY DIFFRACTION2.652016-04-20
33A3A|1|ASelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852Crystal structure of human selenocystine tRNAX-RAY DIFFRACTION3.12009-08-11
44RQE|1|BSelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852human Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsecX-RAY DIFFRACTION42015-11-04
54RQE|1|DSelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852human Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsecX-RAY DIFFRACTION42015-11-04
64ZDP|1|ESelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)X-RAY DIFFRACTION2.72016-04-20
74RQF|1|CSelenocysteine transfer RNAselenocysteine tRNAHomo sapiensEukaryaRF01852human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsecX-RAY DIFFRACTION3.52015-11-04
83HL2|1|ESelenocysteine transfer RNAtRNASecHomo sapiensEukaryaRF01852The crystal structure of the human SepSecS-tRNASec complexX-RAY DIFFRACTION2.812009-10-06
97ZJW|1|FSelenocysteine transfer RNAhuman Ser-tRNA-SecHomo sapiensEukaryaRF01852Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.82022-10-19

Release history

Release3.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.274
Date2022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_90840.4NR_4.0_90840.33.256(8) 7ZJW|1|F, 4ZDP|1|E, 4ZDO|1|E, 4RQF|1|C, 4RQE|1|D, 4RQE|1|B, 3HL2|1|E, 3A3A|1|A(1) 7MDL|1|E(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17MDL|1|EHigh-resolution crystal structure of human SepSecS-tRNASec complexX-RAY DIFFRACTION2.32168
24ZDO|1|EThe crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)X-RAY DIFFRACTION2.65150
34ZDP|1|EThe crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)X-RAY DIFFRACTION2.7148
43HL2|1|EThe crystal structure of the human SepSecS-tRNASec complexX-RAY DIFFRACTION2.81164
53A3A|1|ACrystal structure of human selenocystine tRNAX-RAY DIFFRACTION3.186
64RQF|1|Chuman Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsecX-RAY DIFFRACTION3.563
74RQE|1|Bhuman Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsecX-RAY DIFFRACTION484
84RQE|1|Dhuman Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsecX-RAY DIFFRACTION483
97ZJW|1|FRabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.890