#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18PV7|1|C1+ 8PV7|1|C2 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.122023-11-15
28PVL|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureElectron microscopy2.192023-12-06
38PVK|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureElectron microscopy2.552023-12-06
48PV1|1|C1+ 8PV1|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.562023-11-15
58PV2|1|C1+ 8PV2|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.632023-11-15
67OLC|1|1+ 7OLC|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at idle POST stateElectron microscopy2.92022-01-26
78IA0|1|C1+ 8IA0|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6Electron microscopy2.72023-05-17
87OLD|1|1+ 7OLD|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy32022-01-26
98PV4|1|C1+ 8PV4|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.92023-11-15
108PV5|1|C1+ 8PV5|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.862023-11-15
118PV3|1|C1+ 8PV3|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.82023-11-15
128PV8|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureElectron microscopy2.912024-01-10
138PV6|1|C1+ 8PV6|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.942023-11-15
148OO0|1|1+ 8OO0|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAThermochaetoides thermophilaEukaryaRF02543 + RF00002Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosomeElectron microscopy3.12024-02-21
158I9Z|1|C1+ 8I9Z|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4Electron microscopy2.72023-05-17
167Z3N|1|1+ 7Z3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationElectron microscopy3.22023-04-12
177Z3O|1|1+ 7Z3O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationElectron microscopy3.32023-04-12
188I9X|1|C1+ 8I9X|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1Electron microscopy2.82023-05-17
198I9Y|1|C1+ 8I9Y|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2Electron microscopy3.12023-05-17
208I9W|1|C1+ 8I9W|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3Electron microscopy3.12023-05-17
218I9V|1|C1+ 8I9V|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2Electron microscopy3.12023-05-17
228I9R|1|C1+ 8I9R|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.12023-05-17
238I9T|1|C1+ 8I9T|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1Electron microscopy3.62023-05-17
248I9P|1|C1+ 8I9P|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (306-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16Electron microscopy32023-05-17

Release history

Release3.3333.3343.3353.3363.3373.338
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-05

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18I9R|1|C1+8I9R|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.12045
28I9Z|1|C1+8I9Z|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4ELECTRON MICROSCOPY2.72787
38IA0|1|C1+8IA0|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6ELECTRON MICROSCOPY2.72928
48I9Y|1|C1+8I9Y|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2ELECTRON MICROSCOPY3.12609
58I9X|1|C1+8I9X|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1ELECTRON MICROSCOPY2.82658
68I9W|1|C1+8I9W|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3ELECTRON MICROSCOPY3.12163
78I9T|1|C1+8I9T|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1ELECTRON MICROSCOPY3.62132
88I9V|1|C1+8I9V|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2ELECTRON MICROSCOPY3.12152
98I9P|1|C1+8I9P|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16ELECTRON MICROSCOPY31307
108PVK|1|C1Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureELECTRON MICROSCOPY2.553104
118PV3|1|C1+8PV3|1|C2Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.82964
128PV4|1|C1+8PV4|1|C2Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.93102
138PV1|1|C1+8PV1|1|C2Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.563044
148PV7|1|C1+8PV7|1|C2Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.123044
158PVL|1|C1Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureELECTRON MICROSCOPY2.193044
168PV2|1|C1+8PV2|1|C2Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.633022
178PV5|1|C1+8PV5|1|C2Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.863026
188PV8|1|C1Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureELECTRON MICROSCOPY2.913053
198PV6|1|C1+8PV6|1|C2Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.943068
207OLD|1|1+7OLD|1|4Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY33192
217Z3N|1|1+7Z3N|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationELECTRON MICROSCOPY3.23190
227Z3O|1|1+7Z3O|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationELECTRON MICROSCOPY3.33190
237OLC|1|1+7OLC|1|4Thermophilic eukaryotic 80S ribosome at idle POST stateELECTRON MICROSCOPY2.93190
248OO0|1|1+8OO0|1|4Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosomeELECTRON MICROSCOPY3.13190
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