#IFECompound(s)RNA source organismTitleMethodResolutionDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION12014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.972016-04-13
36Y0Y|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.952021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.042003-11-25
57QP2|1|ARNA (27-MER)synthetic construct1-deazaguanosine modified-RNA Sarcin Ricin LoopX-RAY DIFFRACTION0.92022-07-20
64NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.012014-11-19
76ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.92020-12-16
83DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.972009-03-24
93DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION12009-03-24
107L3R|1|ARNA (27-MER)synthetic construct23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.012021-05-05
114Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION12015-11-18
127JJE|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.252020-12-23
133DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION12009-03-24
144NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.162014-12-10
155NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.852017-07-26
163S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.12012-04-11
175MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.852018-01-17
183DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.962009-03-24
193DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION12009-03-24
20483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.111999-10-08
213S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.22012-04-11
227JJD|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.212020-12-23
231MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.412003-02-25
24480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.51999-10-08
256Y0T|1|BRNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
266Y0T|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
277M3V|1|ARNA (27-MER)synthetic constructRNA bulged-G motifX-RAY DIFFRACTION2.192022-03-23
287JJF|1|ARNA/DNA (27-mer)Escherichia coliSarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.22020-12-23
291JBR|1|D31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.152001-10-26
307EEN|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
317EEN|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
327EEM|1|ARNA (27-MER)synthetic constructRNA bulged-G motifX-RAY DIFFRACTION2.5932022-03-23
331JBT|1|C29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
346ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
357EEN|1|DDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
361JBT|1|D29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
371JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
387EEN|1|CDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
396ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
406ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
411JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
427EEO|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.7012022-03-23
437EEO|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.7012022-03-23
447UCR|1|ASarcin-Ricin loop RNAHomo sapiensJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-RAY DIFFRACTION12022-07-20

Release history

Release3.2403.2413.2423.2433.2443.2453.2463.2473.248
Date2022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-14

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
26Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
36Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
46Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
5480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
64Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
77JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
8483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
91Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
107UCR|1|AJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-RAY DIFFRACTION156
117QP2|1|A1-deazaguanosine modified-RNA Sarcin Ricin LoopX-RAY DIFFRACTION0.932
125NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
135MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8534
147JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2529
153DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
167JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2129
173S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
187L3R|1|A23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.0130
193DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
206ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.930
214NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
225D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
233DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
243DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
253S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
267M3V|1|ARNA bulged-G motifX-RAY DIFFRACTION2.1927
273DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
284NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
294NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
307EEO|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70114
317EEO|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70114
327EEM|1|ARNA bulged-G motifX-RAY DIFFRACTION2.59326
337EEN|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
347EEN|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.715
357EEN|1|CBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
367EEN|1|DBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
376ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
386ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
396ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
401JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
411JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
421JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
431JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
441JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531