#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18PV7|1|C4 (rep)5S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.122023-11-15
28PVL|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureElectron microscopy2.192023-12-06
38PVK|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureElectron microscopy2.552023-12-06
48PV1|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.562023-11-15
58PV2|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.632023-11-15
68PV3|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.82023-11-15
78PV5|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.862023-11-15
88PV4|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.92023-11-15
98PV8|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureElectron microscopy2.912024-01-10
108PV6|1|C45S ribosomal RNA5S rRNAThermochaetoides thermophila DSM 1495EukaryaRF00001Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.942023-11-15
118I9R|1|C45S ribosomal RNARNA (119-MER)Thermochaetoides thermophila DSM 1495EukaryaRF00001Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.12023-05-17
127OZS|1|35S ribosomal RNA5S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF00001Structure of the hexameric 5S RNP from C. thermophilumElectron microscopy3.52022-10-12

Release history

Release3.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.344
Date2024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18PV6|1|C4Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.94115
28PV8|1|C4Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureELECTRON MICROSCOPY2.91115
38I9R|1|C4Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.1119
48PVK|1|C4Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureELECTRON MICROSCOPY2.55119
58PV5|1|C4Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.86119
68PVL|1|C4Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureELECTRON MICROSCOPY2.19119
78PV7|1|C4Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.12119
88PV2|1|C4Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.63119
98PV3|1|C4Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.8119
108PV1|1|C4Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.56119
118PV4|1|C4Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.9119
127OZS|1|3Structure of the hexameric 5S RNP from C. thermophilumELECTRON MICROSCOPY3.5119
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