Equivalence class NR_4.0_96683.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z4J|1|B (rep) | RNA (5'-R(*UP*UP*UP*U)-3') | Drosophila melanogaster | Eukarya | Structure of Tailor in complex with U4 RNA | X-ray diffraction | 1.82 | 2018-10-31 | ||
| 2 | 5GMF|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | ||
| 3 | 5GMF|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | ||
| 4 | 5GMF|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | ||
| 5 | 5GMF|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | ||
| 6 | 5GMG|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | ||
| 7 | 5GMG|1|C | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Eukarya | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | ||
| 8 | 3IE1|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 9 | 3IE1|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 10 | 3IE1|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 11 | 4DR7|1|V | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 | ||
| 12 | 3IE1|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 13 | 2QQP|1|R | RNA (5'-R(*UP*UP*UP*U)-3') | Crystal Structure of Authentic Providence Virus | X-ray diffraction | 3.8 | 2009-01-20 | ||||
| 14 | 2ZDE|1|E | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 15 | 2ZDE|1|F | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 16 | 2ZDE|1|H | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 17 | 2ZDE|1|G | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 18 | 1NB7|1|E | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 | ||||
| 19 | 1NB7|1|F | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_96683.3 | NR_4.0_96683.2 | 3.46 | (18) 5GMF|1|E, 4DR7|1|V, 3IE1|1|H, 3IE1|1|G, 3IE1|1|F, 3IE1|1|E, 2ZDE|1|H, 2ZDE|1|G, 2ZDE|1|F, 2ZDE|1|E, 2QQP|1|R, 1NB7|1|F, 1NB7|1|E, 5GMG|1|D, 5GMG|1|C, 5GMF|1|H, 5GMF|1|G, 5GMF|1|F | (1) 5Z4J|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_96683.3 | NR_4.0_96683.4 | 3.52 | (19) 2ZDE|1|G, 5GMF|1|F, 2ZDE|1|F, 5GMF|1|E, 2ZDE|1|E, 4DR7|1|V, 2QQP|1|R, 3IE1|1|H, 5Z4J|1|B, 1NB7|1|F, 3IE1|1|G, 5GMG|1|D, 1NB7|1|E, 3IE1|1|F, 5GMG|1|C, 3IE1|1|E, 5GMF|1|H, 2ZDE|1|H, 5GMF|1|G | (0) | (2) 6E4P|1|K, 6E4P|1|J |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5GMG|1|D | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 2 | 5GMF|1|H | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 3 | 5GMF|1|F | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 4 | 5GMF|1|E | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 5 | 5GMF|1|G | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 6 | 5GMG|1|C | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 7 | 3IE1|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 8 | 2ZDE|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 9 | 2ZDE|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 10 | 3IE1|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 11 | 3IE1|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 12 | 2ZDE|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 13 | 5Z4J|1|B | Structure of Tailor in complex with U4 RNA | X-RAY DIFFRACTION | 1.82 | 4 |
| 14 | 4DR7|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 4 |
| 15 | 2QQP|1|R | Crystal Structure of Authentic Providence Virus | X-RAY DIFFRACTION | 3.8 | 4 |
| 16 | 3IE1|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |
| 17 | 1NB7|1|F | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 18 | 1NB7|1|E | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 19 | 2ZDE|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |