#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18QOA|1|Y (rep)Transfer RNAA-site tRNA-pro, mRNAEscherichia coli BW25113BacteriaRF00005Structure of SecM-stalled Escherichia coli 70S ribosomeElectron microscopy22024-03-20
28QBT|1|6Transfer RNAPro-tRNA, mRNAEscherichia coli BW25113BacteriaRF00005E. coli ApdP-stalled ribosomal complexElectron microscopy2.22024-03-20
38QBT|1|5Transfer RNAPro-tRNA, mRNAEscherichia coli BW25113BacteriaRF00005E. coli ApdP-stalled ribosomal complexElectron microscopy2.22024-03-20
47ST2|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)Electron microscopy2.92022-02-23
57ST6|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Pre translocation, non-rotated 70S ribosome (Structure I)Electron microscopy32022-02-23
67LV0|1|5Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)Electron microscopy3.22021-07-28
77K54|1|5Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)Electron microscopy3.22021-07-28
87K53|1|7Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)Electron microscopy3.22021-07-28
97SSO|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)Electron microscopy3.22022-02-23
107SSN|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)Electron microscopy3.22022-02-23
117ST7|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)Electron microscopy3.22022-02-23
127K55|1|5Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)Electron microscopy3.32021-07-28
137SSD|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Mid translocation intermediate with EF-G bound with GDP (Structure IV)Electron microscopy3.32022-02-23
147K52|1|5Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)Electron microscopy3.42021-07-28
157K50|1|7Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Pre-translocation non-frameshifting(CCA-A) complex (Structure I)Electron microscopy3.42021-07-28
167K51|1|5Transfer RNAtRNAPro, mRNAEscherichia coli K-12BacteriaRF00005Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)Electron microscopy3.52021-07-28
177SSL|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)Electron microscopy3.82022-02-23
187SSW|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Late translocation intermediate with EF-G dissociated (Structure VI)Electron microscopy3.82022-02-23
197SS9|1|5Transfer RNAtRNA Pro, mRNAEscherichia coli K-12BacteriaRF00005Late translocation intermediate with EF-G partially dissociated (Structure V)Electron microscopy3.92022-02-23

Release history

Release3.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.344
Date2024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18QBT|1|5E. coli ApdP-stalled ribosomal complexELECTRON MICROSCOPY2.277
28QOA|1|YStructure of SecM-stalled Escherichia coli 70S ribosomeELECTRON MICROSCOPY277
37SSO|1|5Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)ELECTRON MICROSCOPY3.277
47ST6|1|5Pre translocation, non-rotated 70S ribosome (Structure I)ELECTRON MICROSCOPY377
57K50|1|7Pre-translocation non-frameshifting(CCA-A) complex (Structure I)ELECTRON MICROSCOPY3.477
67K53|1|7Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)ELECTRON MICROSCOPY3.277
78QBT|1|6E. coli ApdP-stalled ribosomal complexELECTRON MICROSCOPY2.277
87ST2|1|5Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)ELECTRON MICROSCOPY2.977
97K55|1|5Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)ELECTRON MICROSCOPY3.377
107K52|1|5Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)ELECTRON MICROSCOPY3.477
117K54|1|5Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)ELECTRON MICROSCOPY3.277
127K51|1|5Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)ELECTRON MICROSCOPY3.577
137SSD|1|5Mid translocation intermediate with EF-G bound with GDP (Structure IV)ELECTRON MICROSCOPY3.377
147SS9|1|5Late translocation intermediate with EF-G partially dissociated (Structure V)ELECTRON MICROSCOPY3.977
157SSW|1|5Late translocation intermediate with EF-G dissociated (Structure VI)ELECTRON MICROSCOPY3.877
167LV0|1|5Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)ELECTRON MICROSCOPY3.277
177SSN|1|5Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)ELECTRON MICROSCOPY3.277
187ST7|1|5Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)ELECTRON MICROSCOPY3.276
197SSL|1|5Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)ELECTRON MICROSCOPY3.877
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