#PDBTitleRNA source organismCompoundsMethodResolutionDate
13TD1|1|B+3TD1|1|A (rep)Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.12011-12-07
23BNL|1|A+3BNL|1|BCrystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3A site of bacterial ribosome, A site of bacterial ribosomeX-RAY DIFFRACTION2.62008-06-24
31MWL|1|A+1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.42003-02-18
45BWS|1|A+5BWS|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.62016-06-22
54PDQ|1|A+4PDQ|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogRNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3'), RNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')X-RAY DIFFRACTION32015-01-07
62ESI|1|A+2ESI|1|BComplex between Kanamycin A and the 16S-Rrna A Site.5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION32005-12-20
71YRJ|1|A+1YRJ|1|BCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideBacterial 16 S Ribosomal RNA A Site Oligonucleotide, Bacterial 16 S Ribosomal RNA A Site OligonucleotideX-RAY DIFFRACTION2.72005-06-07
82F4T|1|B+2F4T|1|AAsite RNA + designer antibiotic5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION32006-05-02
95BXK|1|C+5BXK|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION3.12016-06-22
105BWS|1|C+5BWS|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.62016-06-22
115BXK|1|A+5BXK|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION3.12016-06-22
124GPW|1|A+4GPW|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION32013-04-03
134WCP|1|A+4WCP|1|B+4WCP|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.42015-09-09
144GPY|1|A+4GPY|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.82013-04-03
154F8U|1|A+4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION22012-08-15
162BEE|1|A+2BEE|1|BComplex Between Paromomycin derivative JS4 and the 16S-Rrna A Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.62005-12-20
174F8V|1|A+4F8V|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.82012-08-15
182ET4|1|A+2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.42005-12-13
192BE0|1|A+2BE0|1|BComplex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.632005-12-20
201LC4|1|A+1LC4|1|BCrystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.542003-04-08
214P20|1|A+4P20|1|BCrystal structures of the bacterial ribosomal decoding site complexed with amikacin5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.72014-05-07
224GPX|1|A+4GPX|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.62013-04-03
233S4P|1|A+3S4P|1|BCrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.562011-09-21
242ET5|1|A+2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.22005-12-13
254WCS|1|A+4WCS|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION3.12015-09-09
262PWT|1|A+2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group22-mer of the ribosomal decoding site, 22-mer of the ribosomal decoding siteX-RAY DIFFRACTION1.82007-09-18
274WCR|1|A+4WCR|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION3.52015-09-09
282ESJ|1|A+2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.22005-12-20
293WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.32014-11-05
304K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.52013-07-31
312ET3|1|A+2ET3|1|BComplex Between Gentamicin C1A and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.82005-12-13
324WCQ|1|A+4WCQ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.12015-09-09
331J7T|1|A+1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.52002-05-18
344P3S|1|B+4P3S|1|ACrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.32016-05-04

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.150
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_97151.1NR_4.0_25780.12.93(5) 5BXK|1|C+5BXK|1|D, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|A+5BWS|1|B(29) 2ET3|1|A+2ET3|1|B, 1MWL|1|A+1MWL|1|B, 2BEE|1|A+2BEE|1|B, 4WCS|1|A+4WCS|1|B, 4GPX|1|A+4GPX|1|B, 2F4T|1|B+2F4T|1|A, 3S4P|1|A+3S4P|1|B, 4P20|1|A+4P20|1|B, 4F8U|1|A+4F8U|1|B, 1YRJ|1|A+1YRJ|1|B, 4WCQ|1|A+4WCQ|1|B, 1J7T|1|A+1J7T|1|B, 2PWT|1|A+2PWT|1|B, 2ESI|1|A+2ESI|1|B, 2ET4|1|A+2ET4|1|B, 4P3S|1|B+4P3S|1|A, 3TD1|1|B+3TD1|1|A, 4F8V|1|A+4F8V|1|B, 4GPY|1|A+4GPY|1|B, 4WCR|1|A+4WCR|1|B, 2ESJ|1|A+2ESJ|1|B, 1LC4|1|A+1LC4|1|B, 2BE0|1|A+2BE0|1|B, 4GPW|1|A+4GPW|1|B, 2ET5|1|A+2ET5|1|B, 3BNL|1|A+3BNL|1|B, 4K32|1|A+4K32|1|B, 3WRU|1|A+3WRU|1|B, 4PDQ|1|A+4PDQ|1|B(0)
NR_4.0_97151.1NR_4.0_27927.12.93(10) 2ET4|1|A+2ET4|1|B, 4F8U|1|A+4F8U|1|B, 2ET3|1|A+2ET3|1|B, 2BEE|1|A+2BEE|1|B, 2BE0|1|A+2BE0|1|B, 3BNL|1|A+3BNL|1|B, 2ET5|1|A+2ET5|1|B, 1MWL|1|A+1MWL|1|B, 1J7T|1|A+1J7T|1|B, 2ESJ|1|A+2ESJ|1|B(24) 3S4P|1|A+3S4P|1|B, 5BWS|1|C+5BWS|1|D, 4P20|1|A+4P20|1|B, 4GPY|1|A+4GPY|1|B, 4WCS|1|A+4WCS|1|B, 4GPW|1|A+4GPW|1|B, 2F4T|1|B+2F4T|1|A, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 3WRU|1|A+3WRU|1|B, 4P3S|1|B+4P3S|1|A, 5BXK|1|A+5BXK|1|B, 4K32|1|A+4K32|1|B, 5BWS|1|A+5BWS|1|B, 5BXK|1|C+5BXK|1|D, 4F8V|1|A+4F8V|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 3TD1|1|B+3TD1|1|A, 2PWT|1|A+2PWT|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B, 4GPX|1|A+4GPX|1|B(4) 2ET8|1|A+2ET8|1|B, 3BNT|1|A, 3BNP|1|A+3BNP|1|B, 1O9M|1|A+1O9M|1|B
NR_4.0_97151.1NR_4.0_36270.12.93(3) 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B, 4F8V|1|A+4F8V|1|B(31) 4WCR|1|A+4WCR|1|B, 2ET4|1|A+2ET4|1|B, 3WRU|1|A+3WRU|1|B, 5BWS|1|A+5BWS|1|B, 2ESJ|1|A+2ESJ|1|B, 4GPW|1|A+4GPW|1|B, 4P20|1|A+4P20|1|B, 1YRJ|1|A+1YRJ|1|B, 1LC4|1|A+1LC4|1|B, 3BNL|1|A+3BNL|1|B, 4P3S|1|B+4P3S|1|A, 1MWL|1|A+1MWL|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2ET5|1|A+2ET5|1|B, 1J7T|1|A+1J7T|1|B, 2BEE|1|A+2BEE|1|B, 5BWS|1|C+5BWS|1|D, 4GPY|1|A+4GPY|1|B, 5BXK|1|A+5BXK|1|B, 4PDQ|1|A+4PDQ|1|B, 2F4T|1|B+2F4T|1|A, 2BE0|1|A+2BE0|1|B, 4F8U|1|A+4F8U|1|B, 4WCQ|1|A+4WCQ|1|B, 4GPX|1|A+4GPX|1|B, 5BXK|1|C+5BXK|1|D, 4K32|1|A+4K32|1|B, 2ESI|1|A+2ESI|1|B, 4WCS|1|A+4WCS|1|B, 3TD1|1|B+3TD1|1|A, 2ET3|1|A+2ET3|1|B(6) 3BNN|1|C+3BNN|1|D, 2F4U|1|A+2F4U|1|B, 3BNO|1|C+3BNO|1|D, 2F4S|1|A+2F4S|1|B, 3BNN|1|A+3BNN|1|B, 3BNO|1|A+3BNO|1|B
NR_4.0_97151.1NR_4.0_43554.42.93(16) 2ESI|1|A+2ESI|1|B, 4GPX|1|A+4GPX|1|B, 2F4T|1|B+2F4T|1|A, 4P3S|1|B+4P3S|1|A, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 4WCS|1|A+4WCS|1|B, 3WRU|1|A+3WRU|1|B, 4GPY|1|A+4GPY|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 4P20|1|A+4P20|1|B, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 3TD1|1|B+3TD1|1|A, 4WCR|1|A+4WCR|1|B(18) 2ESJ|1|A+2ESJ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BWS|1|C+5BWS|1|D, 2BE0|1|A+2BE0|1|B, 3BNL|1|A+3BNL|1|B, 5BXK|1|A+5BXK|1|B, 3S4P|1|A+3S4P|1|B, 1J7T|1|A+1J7T|1|B, 4F8U|1|A+4F8U|1|B, 5BWS|1|A+5BWS|1|B, 5BXK|1|C+5BXK|1|D, 2ET3|1|A+2ET3|1|B, 2ET4|1|A+2ET4|1|B, 2PWT|1|A+2PWT|1|B, 4F8V|1|A+4F8V|1|B, 1MWL|1|A+1MWL|1|B, 2BEE|1|A+2BEE|1|B, 2ET5|1|A+2ET5|1|B(14) 2O3Y|1|A+2O3Y|1|B, 4K31|1|B+4K31|1|C, 3BNR|1|C+3BNR|1|D, 3BNQ|1|C+3BNQ|1|D, 2O3W|1|A+2O3W|1|B, 2G5K|1|A+2G5K|1|B, 3BNS|1|C+3BNS|1|D, 2O3V|1|A+2O3V|1|B, 3TD0|1|B+3TD0|1|A, 3BNQ|1|A+3BNQ|1|B, 2FQN|1|A+2FQN|1|B, 3BNS|1|A+3BNS|1|B, 3BNR|1|A+3BNR|1|B, 2O3X|1|A+2O3X|1|B

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14PDQ|1|A+4PDQ|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION323
25BXK|1|A+5BXK|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-RAY DIFFRACTION3.122
35BWS|1|C+5BWS|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-RAY DIFFRACTION2.623
45BXK|1|C+5BXK|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-RAY DIFFRACTION3.123
53BNL|1|A+3BNL|1|BCrystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3X-RAY DIFFRACTION2.622
65BWS|1|A+5BWS|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-RAY DIFFRACTION2.623
71MWL|1|A+1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.424
84F8U|1|A+4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
94WCP|1|A+4WCP|1|B+4WCP|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.422
104F8V|1|A+4F8V|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
112ET4|1|A+2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.421
122ET3|1|A+2ET3|1|BComplex Between Gentamicin C1A and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.821
131J7T|1|A+1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.521
142ET5|1|A+2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.221
152F4T|1|B+2F4T|1|AAsite RNA + designer antibioticX-RAY DIFFRACTION323
163S4P|1|A+3S4P|1|BCrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
172PWT|1|A+2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
184GPY|1|A+4GPY|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.822
194P20|1|A+4P20|1|BCrystal structures of the bacterial ribosomal decoding site complexed with amikacinX-RAY DIFFRACTION2.721
201LC4|1|A+1LC4|1|BCrystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.5421
212ESI|1|A+2ESI|1|BComplex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION323
224WCS|1|A+4WCS|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.121
234WCR|1|A+4WCR|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.521
243WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
252ESJ|1|A+2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.221
262BEE|1|A+2BEE|1|BComplex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-RAY DIFFRACTION2.621
272BE0|1|A+2BE0|1|BComplex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-RAY DIFFRACTION2.6321
281YRJ|1|A+1YRJ|1|BCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.723
294WCQ|1|A+4WCQ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
303TD1|1|B+3TD1|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
314P3S|1|B+4P3S|1|ACrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.321
324GPX|1|A+4GPX|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.621
334GPW|1|A+4GPW|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION322
344K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521