#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18QCQ|1|B (rep)5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001B. subtilis ApdA-stalled ribosomal complexElectron microscopy2.32024-03-20
26TPQ|1|V5S ribosomal RNApre-5S rRNABacillus subtilisBacteriaRF00001RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.072020-09-30
38BUU|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001ARE-ABCF VmlR2 bound to a 70S ribosomeElectron microscopy2.92023-04-05
47AQC|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
57AS8|1|B5S ribosomal RNA5s rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.92020-12-09
67AQD|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
76TNN|1|V5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.072020-09-30
86HA1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
97OPE|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)Electron microscopy3.22021-07-21
107O5B|1|Y5S ribosomal RNA5S rRNA (112-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00001Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.332022-02-02
118QPP|1|Y5S ribosomal RNA5S rRNA (112-MER)Bacillus subtilisBacteriaRF00001Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.42023-12-27
127QV2|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis collided disome (Collided 70S)Electron microscopy3.52022-03-09
137AS9|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.52020-12-23
147QV1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis collided disome (Leading 70S)Electron microscopy3.52022-03-09
156HA8|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
168R55|1|Y5S ribosomal RNA5S rRNA (112-MER)Bacillus subtilisBacteriaRF00001Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.572024-01-17
176PPF|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18
185NJT|1|V5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
193J9W|1|BB5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29

Release history

Release3.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.338
Date2024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18R55|1|YBacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.57112
28QPP|1|YBacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.4112
37O5B|1|YCryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.33112
47AQD|1|BStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.1112
57AQC|1|BStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.99112
63J9W|1|BBCryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.9112
75NJT|1|VStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.8112
87AS9|1|BBacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.5112
97AS8|1|BBacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.9112
107OPE|1|BRqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)ELECTRON MICROSCOPY3.2112
118BUU|1|BARE-ABCF VmlR2 bound to a 70S ribosomeELECTRON MICROSCOPY2.9112
128QCQ|1|BB. subtilis ApdA-stalled ribosomal complexELECTRON MICROSCOPY2.3112
136HA8|1|BCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.5112
146HA1|1|BCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.1112
157QV2|1|BBacillus subtilis collided disome (Collided 70S)ELECTRON MICROSCOPY3.5112
167QV1|1|BBacillus subtilis collided disome (Leading 70S)ELECTRON MICROSCOPY3.5112
176TPQ|1|VRNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.07123
186TNN|1|VMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.07116
196PPF|1|BBacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.4112
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