Equivalence class NR_4.0_97435.16 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8S1P|1|B (rep) | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | YlmH bound to PtRNA-50S | Electron microscopy | 1.96 | 2024-06-12 |
| 2 | 8QCQ|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | B. subtilis ApdA-stalled ribosomal complex | Electron microscopy | 2.3 | 2024-03-20 |
| 3 | 6TPQ|1|V | 5S ribosomal RNA | pre-5S rRNA | Bacillus subtilis | Bacteria | RF00001 | RNase M5 bound to 50S ribosome with precursor 5S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 4 | 8BUU|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | ARE-ABCF VmlR2 bound to a 70S ribosome | Electron microscopy | 2.9 | 2023-04-05 |
| 5 | 7AQC|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 6 | 7AS8|1|B | 5S ribosomal RNA | 5s rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 2.9 | 2020-12-09 |
| 7 | 7AQD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Structure of the bacterial RQC complex (Translocating State) | Electron microscopy | 3.1 | 2020-11-25 |
| 8 | 6TNN|1|V | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 9 | 6HA1|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis | Bacteria | RF00001 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 10 | 7OPE|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | Electron microscopy | 3.2 | 2021-07-21 |
| 11 | 7O5B|1|Y | 5S ribosomal RNA | 5S rRNA (112-MER) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | Electron microscopy | 3.33 | 2022-02-02 |
| 12 | 8S1U|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | YlmH bound to stalled 50S subunits with RqcH and PtRNA | Electron microscopy | 3.4 | 2024-06-12 |
| 13 | 8QPP|1|Y | 5S ribosomal RNA | 5S rRNA (112-MER) | Bacillus subtilis | Bacteria | RF00001 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.4 | 2023-12-27 |
| 14 | 7QV2|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 15 | 7AS9|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | Electron microscopy | 3.5 | 2020-12-23 |
| 16 | 7QV1|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Bacillus subtilis collided disome (Leading 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 17 | 6HA8|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | Electron microscopy | 3.5 | 2018-08-29 |
| 18 | 8R55|1|Y | 5S ribosomal RNA | 5S rRNA (112-MER) | Bacillus subtilis | Bacteria | RF00001 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.57 | 2024-01-17 |
| 19 | 6PPF|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Bacterial 45SRbgA ribosomal particle class B | Electron microscopy | 3.4 | 2019-09-18 |
| 20 | 5NJT|1|V | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis | Bacteria | RF00001 | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | Electron microscopy | 3.8 | 2017-06-14 |
| 21 | 3J9W|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis | Bacteria | RF00001 | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | Electron microscopy | 3.9 | 2015-04-29 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6PPF|1|B | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 112 |
| 2 | 6TNN|1|V | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 116 |
| 3 | 6TPQ|1|V | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 123 |
| 4 | 7QV1|1|B | Bacillus subtilis collided disome (Leading 70S) | ELECTRON MICROSCOPY | 3.5 | 112 |
| 5 | 7QV2|1|B | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 112 |
| 6 | 6HA1|1|B | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 112 |
| 7 | 6HA8|1|B | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 112 |
| 8 | 8S1U|1|B | YlmH bound to stalled 50S subunits with RqcH and PtRNA | ELECTRON MICROSCOPY | 3.4 | 112 |
| 9 | 8S1P|1|B | YlmH bound to PtRNA-50S | ELECTRON MICROSCOPY | 1.96 | 112 |
| 10 | 8QCQ|1|B | B. subtilis ApdA-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.3 | 112 |
| 11 | 8BUU|1|B | ARE-ABCF VmlR2 bound to a 70S ribosome | ELECTRON MICROSCOPY | 2.9 | 112 |
| 12 | 7OPE|1|B | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | ELECTRON MICROSCOPY | 3.2 | 112 |
| 13 | 7AS8|1|B | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 112 |
| 14 | 7AS9|1|B | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 112 |
| 15 | 5NJT|1|V | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 112 |
| 16 | 3J9W|1|BB | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 112 |
| 17 | 7AQC|1|B | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 112 |
| 18 | 7AQD|1|B | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 112 |
| 19 | 7O5B|1|Y | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | ELECTRON MICROSCOPY | 3.33 | 112 |
| 20 | 8QPP|1|Y | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.4 | 112 |
| 21 | 8R55|1|Y | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.57 | 112 |
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