Equivalence class NR_all_03196.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4KZY|1|i (rep) | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-ray diffraction | 7.01 | 2013-07-24 |
| 2 | 4KZZ|1|i | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
| 3 | 4KZX|1|i | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1. | X-ray diffraction | 7.81 | 2013-07-24 |
| 4 | 4UJC|1|C1 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 5 | 4UJD|1|C1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 6 | 4UJE|1|B1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_03196.1 | NR_20.0_03196.2 | 2.9 | (6) 4UJE|1|B1, 4UJD|1|C1, 4UJC|1|C1, 4KZZ|1|i, 4KZY|1|i, 4KZX|1|i | (0) | (1) 4D5L|1|1 |
| NR_all_03196.1 | NR_all_03196.2 | 2.9 | (6) 4UJE|1|B1, 4UJD|1|C1, 4UJC|1|C1, 4KZZ|1|i, 4KZY|1|i, 4KZX|1|i | (0) | (1) 4D5L|1|1 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJE|1|B1 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 |
| 2 | 4UJD|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 |
| 3 | 4UJC|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 |
| 4 | 4KZZ|1|i | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 |
| 5 | 4KZY|1|i | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 |
| 6 | 4KZX|1|i | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 |