#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
34U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
44U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
54U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
64U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
74U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
94V8Z|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
104V8Y|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
114U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
125FCJ|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
135I4L|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
144U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
155DC3|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
165FCI|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
174U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
184U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
194U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
204U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
214U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
224U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
234U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
244U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
254U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
264U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
274U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
284U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
294U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
304U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
314U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
324U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
334U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
345I4L|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
354U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
364U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
374U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
384U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
394U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
404U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
415DC3|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
425FCJ|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
435FCI|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
444U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
453J6Y|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
464U4O|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
473J78|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
483J77|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
493J6X|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
504U4O|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
514V7R|1|C118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
524V7R|1|A118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
534V6I|1|CA18S rRNASaccharomyces cerevisiaeLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09

Release history

Release2.812.822.832.842.852.862.872.882.892.90
Date2016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-26

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03510.4NR_20.0_03510.52.91(53) 5DC3|1|2, 4U4N|1|6, 5FCI|1|2, 4U4O|1|6, 5FCJ|1|2, 4U4Q|1|6, 5I4L|1|2, 4U4R|1|6, 4U4U|1|6, 4U4Y|1|6, 4U4Z|1|6, 4U50|1|6, 4U51|1|6, 4U52|1|6, 4U53|1|6, 4U55|1|6, 4U56|1|6, 3J6Y|1|1S, 4U6F|1|6, 3J78|1|1S, 4V7R|1|A1, 4U3M|1|6, 4V88|1|A2, 4U3N|1|6, 4V8Y|1|B2, 4U3U|1|6, 5DC3|1|6, 4U4O|1|2, 5FCI|1|6, 4U4Q|1|2, 5FCJ|1|6, 4U4R|1|2, 5I4L|1|6, 4U4U|1|2, 4U4Y|1|2, 4U4Z|1|2, 4U50|1|2, 4U51|1|2, 4U52|1|2, 4U53|1|2, 4U55|1|2, 4U56|1|2, 3J6X|1|1S, 4U6F|1|2, 3J77|1|1S, 4V6I|1|CA, 4U3M|1|2, 4V7R|1|C1, 4U3N|1|2, 4V88|1|A6, 4U3U|1|2, 4V8Z|1|B2, 4U4N|1|2(0) (2) 5DAT|1|2, 5DAT|1|6
NR_all_03510.4NR_3.0_03510.52.91(14) 4U52|1|2, 4U4U|1|2, 4U3U|1|2, 4U3M|1|6, 4U4U|1|6, 4U3U|1|6, 4U4R|1|6, 4U4Q|1|2, 4U3M|1|2, 4U4Q|1|6, 4U4R|1|2, 4V88|1|A2, 4U52|1|6, 4V88|1|A6(39) 4V6I|1|CA, 5FCJ|1|6, 5DC3|1|2, 3J77|1|1S, 4V8Z|1|B2, 3J6Y|1|1S, 5FCJ|1|2, 4U4N|1|2, 5FCI|1|6, 4U3N|1|6, 3J6X|1|1S, 4U4Y|1|2, 4U4O|1|6, 4U3N|1|2, 4U50|1|2, 4U4Z|1|6, 4U4O|1|2, 4U56|1|6, 4U53|1|2, 4U51|1|6, 4U4Z|1|2, 4V7R|1|A1, 4U56|1|2, 4U55|1|6, 4U51|1|2, 4U6F|1|6, 4U55|1|2, 4V8Y|1|B2, 4U6F|1|2, 5FCI|1|2, 4V7R|1|C1, 5I4L|1|6, 5I4L|1|2, 5DC3|1|6, 3J78|1|1S, 4U4N|1|6, 4U4Y|1|6, 4U50|1|6, 4U53|1|6(0)
NR_all_03510.4NR_3.5_03510.52.91(42) 4U4R|1|6, 4U4Q|1|2, 4U4U|1|2, 4U4Q|1|6, 4U4N|1|2, 4U4R|1|2, 4U4N|1|6, 5I4L|1|6, 5FCJ|1|2, 4U56|1|2, 4U53|1|6, 5FCJ|1|6, 4U56|1|6, 4U55|1|2, 5I4L|1|2, 5FCI|1|6, 4U6F|1|2, 4U55|1|6, 4U53|1|2, 4U50|1|2, 5DC3|1|2, 4U4Y|1|6, 4U6F|1|6, 5DC3|1|6, 4V88|1|A2, 4U4Z|1|2, 4U4U|1|6, 5FCI|1|2, 4V88|1|A6, 4U4Z|1|6, 4U4Y|1|2, 4U3M|1|2, 4U3U|1|6, 4U3N|1|2, 4U51|1|6, 4U3N|1|6, 4U52|1|2, 4U50|1|6, 4U3U|1|2, 4U3M|1|6, 4U52|1|6, 4U51|1|2(11) 4V7R|1|A1, 4U4O|1|6, 3J6X|1|1S, 4V8Y|1|B2, 4U4O|1|2, 3J77|1|1S, 4V7R|1|C1, 4V6I|1|CA, 3J6Y|1|1S, 4V8Z|1|B2, 3J78|1|1S(2) 5DAT|1|6, 5DAT|1|2
NR_all_03510.4NR_4.0_03510.52.91(46) 4U4Y|1|6, 4U4R|1|2, 4U3M|1|2, 4U4R|1|6, 4U4Z|1|2, 4U3M|1|6, 4U4Z|1|6, 4U4U|1|2, 4U4U|1|6, 4U50|1|2, 4U4Q|1|6, 4U4Y|1|2, 4V7R|1|C1, 4U56|1|2, 4U4O|1|6, 4U3U|1|2, 4U53|1|6, 4U51|1|2, 4V88|1|A2, 4U56|1|6, 4U3U|1|6, 4U4Q|1|2, 4U51|1|6, 4U6F|1|2, 4U55|1|2, 4V88|1|A6, 4U4N|1|2, 4U55|1|6, 4U52|1|2, 5DC3|1|2, 4U6F|1|6, 4U4N|1|6, 4U3N|1|2, 4U52|1|6, 4V7R|1|A1, 4U3N|1|6, 5DC3|1|6, 4U4O|1|2, 4U50|1|6, 4U53|1|2, 5I4L|1|6, 5FCI|1|2, 5FCI|1|6, 5FCJ|1|2, 5FCJ|1|6, 5I4L|1|2(7) 4V6I|1|CA, 4V8Z|1|B2, 3J77|1|1S, 3J6Y|1|1S, 3J78|1|1S, 4V8Y|1|B2, 3J6X|1|1S(2) 5DAT|1|2, 5DAT|1|6
NR_all_03510.4NR_all_03510.52.91(53) 4U52|1|6, 4U53|1|6, 3J6X|1|1S, 4U55|1|6, 3J77|1|1S, 4U56|1|6, 4U3M|1|2, 4U6F|1|6, 4U3N|1|2, 4V7R|1|A1, 4U3U|1|2, 4V88|1|A2, 4U4N|1|2, 4V8Y|1|B2, 4U4O|1|2, 5DC3|1|2, 4U4Q|1|2, 5FCI|1|2, 4U4R|1|2, 5FCJ|1|2, 4U4U|1|2, 5I4L|1|2, 4U4Y|1|6, 4U4Z|1|6, 4U50|1|6, 4U51|1|6, 4U52|1|2, 4U53|1|2, 4U55|1|2, 4U56|1|2, 4U6F|1|2, 4V6I|1|CA, 4V7R|1|C1, 4V88|1|A6, 4V8Z|1|B2, 5DC3|1|6, 5FCI|1|6, 5FCJ|1|6, 4U4Y|1|2, 5I4L|1|6, 4U4Z|1|2, 4U50|1|2, 4U51|1|2, 3J6Y|1|1S, 3J78|1|1S, 4U3M|1|6, 4U3N|1|6, 4U3U|1|6, 4U4N|1|6, 4U4O|1|6, 4U4Q|1|6, 4U4R|1|6, 4U4U|1|6(0) (2) 5DAT|1|2, 5DAT|1|6

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength