BGSU RNA Site //

Equivalence class NR_all_04871.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
13PEY|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-ray diffraction1.42011-03-23
23PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-ray diffraction1.52011-03-23
32HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
43EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
53EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
62HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.45
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_04871.1NR_1.5_74924.12.46(2) 3PEW|1|B, 3PEY|1|B(4) 2HYI|1|L, 2HYI|1|F, 3EX7|1|J, 3EX7|1|F(1) 4ALP|1|E
NR_all_04871.1NR_2.0_74924.12.46(2) 3PEY|1|B, 3PEW|1|B(4) 2HYI|1|L, 2HYI|1|F, 3EX7|1|J, 3EX7|1|F(4) 4ALP|1|E, 3O8C|1|C, 3PF5|1|R, 3PF5|1|S
NR_all_04871.1NR_2.5_74924.12.46(6) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (7) 3O8R|1|C, 5BTE|1|C, 3PF5|1|R, 5BTE|1|D, 3PF5|1|S, 3O8C|1|C, 4ALP|1|E
NR_all_04871.1NR_20.0_74924.12.46(6) 3PEY|1|B, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 2HYI|1|F, 2HYI|1|L(0) (10) 3O8R|1|C, 4NL3|1|R, 3PF5|1|R, 4NL3|1|Z, 3O8C|1|C, 4ALP|1|E, 5BTE|1|D, 1N34|1|Z, 3PF5|1|S, 5BTE|1|C
NR_all_04871.1NR_3.0_74924.12.46(6) 3PEW|1|B, 3PEY|1|B, 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J(0) (7) 4ALP|1|E, 3O8R|1|C, 5BTE|1|C, 3O8C|1|C, 3PF5|1|R, 5BTE|1|D, 3PF5|1|S
NR_all_04871.1NR_3.5_74924.12.46(6) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (9) 3PF5|1|R, 4NL3|1|Z, 3O8R|1|C, 4NL3|1|R, 3O8C|1|C, 4ALP|1|E, 5BTE|1|D, 3PF5|1|S, 5BTE|1|C
NR_all_04871.1NR_4.0_74924.12.46(6) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B(0) (10) 3PF5|1|S, 5BTE|1|C, 3O8R|1|C, 4NL3|1|R, 1N34|1|Z, 3PF5|1|R, 4NL3|1|Z, 3O8C|1|C, 4ALP|1|E, 5BTE|1|D
NR_all_04871.1NR_all_74924.12.46(6) 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3PEW|1|B, 3PEY|1|B, 2HYI|1|F(0) (10) 3O8R|1|C, 4NL3|1|R, 1N34|1|Z, 3PF5|1|S, 5BTE|1|C, 3O8C|1|C, 4ALP|1|E, 5BTE|1|D, 3PF5|1|R, 4NL3|1|Z

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
22HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
33EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
43EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
53PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
63PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
Copyright 2023 BGSU RNA group. Page generated in 0.0037 s