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Equivalence class NR_all_05217.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15FLM|1|P (rep)RNA, DNA-RNA ELONGATION SCAFFOLDsynthetic constructStructure of transcribing mammalian RNA polymerase IIElectron microscopy3.42016-01-20
26EXV|1|PRNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3')synthetic constructStructure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitinElectron microscopy3.62018-03-21
36HLR|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)Electron microscopy3.182019-04-03
46HLQ|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.182019-04-03
55M5X|1|RRNASaccharomyces cerevisiaeRNA Polymerase I elongation complex 1Electron microscopy42016-12-21
66HKO|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.422019-04-03
75M3F|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex at 3.8AElectron microscopy3.82016-11-23

Release history

Release3.683.693.703.713.723.733.74
Date2019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_05217.1NR_all_17122.33.68(4) 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P(3) 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_05217.1NR_all_05217.23.75(7) 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P, 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R(0) (1) 3HOY|1|P

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.

#SPDBTitleMethodResolutionLength
1
5FLM|1|P		Structure of transcribing mammalian RNA polymerase IIELECTRON MICROSCOPY3.414
2
6EXV|1|P		Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitinELECTRON MICROSCOPY3.614
3
6HKO|1|R		Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.429
4
6HLR|1|R		Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)ELECTRON MICROSCOPY3.189
5
6HLQ|1|R		Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.189
6
5M3F|1|R		Yeast RNA polymerase I elongation complex at 3.8AELECTRON MICROSCOPY3.88
7
5M5X|1|R		RNA Polymerase I elongation complex 1ELECTRON MICROSCOPY413

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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