#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17QI4|1|A (rep)Large subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.212022-07-13
27OF0|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.22021-06-09
36ZM6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
47QI5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.632023-07-05
57O9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.52021-06-30
67OF6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.62021-06-09
78ANY|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.852023-08-16
88OIT|1|B8Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF0254139S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.92023-06-14
97OF4|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.72021-06-09
106ZM5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
117OF7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.52021-06-23
127QI6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.982023-05-17
136VMI|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
146VLZ|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
157OF2|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.72021-06-02
168OIR|1|B8Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF0254155S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.12023-06-14
177OF3|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.72021-05-19
187L20|1|ALarge subunit ribosomal RNA16S rRNA mitochondrialHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.152021-05-12
197ODR|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.92021-06-23
207A5J|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.12020-12-23
217OF5|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.92021-06-09
227ODT|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.12021-06-23
237O9K|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.12021-06-30
245OOL|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.062017-09-13
257ODS|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.12021-06-23
267OIC|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.12021-09-15
277A5H|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.32020-12-23
287L08|1|ALarge subunit ribosomal RNA16S RRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.492021-05-12
297PO4|1|ALarge subunit ribosomal RNA16SrRNAHomo sapiensMitochondriaRF02541Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.562022-06-15
307QH7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4Electron microscopy2.892022-05-18
317OIE|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.52021-09-15
326ZSC|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
337A5K|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.72020-12-23
347A5I|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.72020-12-23
357OID|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AElectron microscopy3.72021-09-15
366ZSD|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.72020-09-16
377PD3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPElectron microscopy3.42021-11-17
387OG4|1|XALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.82021-06-23
397QH6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1Electron microscopy3.082022-03-02
403J9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15
416I9R|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinElectron microscopy3.92020-07-08
425OOM|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.032017-09-13
436ZSG|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy42020-10-14
446ZSA|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy42020-10-21
456ZS9|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy42020-10-14
467OIA|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.22021-09-15
473J7Y|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.42014-10-15
487A5G|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAElectron microscopy4.332020-12-23
497OIB|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.32021-09-15
507OI9|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.32021-09-15
516NU2|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.92019-04-17
527A5F|1|A3Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsElectron microscopy4.42020-12-23
537OI8|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.52021-09-15
547OI7|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.52021-09-15
556ZSB|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.52020-09-16
566NU3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.42019-04-17
576ZSE|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy52020-09-16
587OI6|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1Electron microscopy5.72021-10-13

Release history

Release3.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.312
Date2023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-06

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
6NU2|1|A
Structural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.91472
2
6NU3|1|A
Structural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.41472
3
6VMI|1|A
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
4
6VLZ|1|A
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
5
7L08|1|A
Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.491527
6
7L20|1|A
Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.151527
7
3J7Y|1|A
Structure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.41473
8
3J9M|1|A
Structure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.51472
9
7A5F|1|A3
Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsELECTRON MICROSCOPY4.41503
10
7A5G|1|A3
Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAELECTRON MICROSCOPY4.331503
11
7A5I|1|A3
Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.71485
12
7A5K|1|A3
Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.71503
13
7A5J|1|A
Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.11492
14
5OOL|1|A
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.061441
15
7A5H|1|A
Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.31457
16
7OIC|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.11385
17
7OIE|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.51472
18
7OID|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.71472
19
6ZSE|1|XA
Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY51501
20
6ZSB|1|XA
Human mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.51501
21
6ZSA|1|XA
Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY41501
22
7OG4|1|XA
Human mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.81498
23
6ZSC|1|XA
Human mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.51501
24
6ZSD|1|XA
Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.71501
25
6ZSG|1|XA
Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY41501
26
6ZS9|1|XA
Human mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY41501
27
6I9R|1|A
Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.91498
28
8OIR|1|B8
55S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.11553
29
8OIT|1|B8
39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.91553
30
7QI4|1|A
Human mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.211553
31
7QI5|1|A
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.631553
32
8ANY|1|A
Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.851553
33
6ZM6|1|A
Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.591531
34
6ZM5|1|A
Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.891534
35
7QI6|1|A
Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.981553
36
7OF6|1|A
Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.61460
37
7OF4|1|A
Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.71460
38
7OF2|1|A
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.71407
39
7OF5|1|A
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.91386
40
7OF7|1|A
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.51373
41
7ODT|1|A
State C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11451
42
7QH7|1|A
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4ELECTRON MICROSCOPY2.891256
43
7OF0|1|A
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.21376
44
7OF3|1|A
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.71386
45
7ODR|1|A
State A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.91417
46
7ODS|1|A
State B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11414
47
7O9M|1|A
Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.51453
48
7O9K|1|A
Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.11435
49
7PD3|1|A
Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPELECTRON MICROSCOPY3.41363
50
7QH6|1|A
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.081133
51
7OI9|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.31092
52
7OI7|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.51054
53
7OI8|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.51092
54
7OIA|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.21092
55
7OIB|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.31092
56
5OOM|1|A
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.031092
57
7PO4|1|A
Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.561145
58
7OI6|1|A
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1ELECTRON MICROSCOPY5.71208

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