Equivalence class NR_all_13071.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6EM3|1|2 (rep) | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.2 | 2017-12-27 |
| 2 | 6EM4|1|2 | 5.8S ribosomal RNA | Saccharomyces cerevisiae genomic DNA sequence contains ITS1, 5.8S rRNA gene, ITS2, strain IMA 105Y | Saccharomyces cerevisiae | Eukarya | RF00002 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.1 | 2017-12-27 |
| 3 | 6EM5|1|2 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.3 | 2017-12-27 |
| 4 | 6I7O|1|BS | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
| 5 | 6I7O|1|YS | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
| 6 | 4V7F|1|2 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | Arx1 pre-60S particle. | Electron microscopy | 8.7 | 2014-07-09 |
| 7 | 5JCS|1|y | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | Electron microscopy | 9.5 | 2016-11-16 |
Release history
| Release | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6I7O|1|BS | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 157 |
| 2 | 6I7O|1|YS | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 157 |
| 3 | 5JCS|1|y | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | ELECTRON MICROSCOPY | 9.5 | 158 |
| 4 | 6EM5|1|2 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 4.3 | 158 |
| 5 | 6EM3|1|2 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.2 | 157 |
| 6 | 4V7F|1|2 | Arx1 pre-60S particle. | ELECTRON MICROSCOPY | 8.7 | 158 |
| 7 | 6EM4|1|2 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 4.1 | 158 |