1 | 4YCO|1|D (rep) | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
2 | 4YCO|1|E | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
3 | 4YCO|1|F | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
4 | 3FOZ|1|C | Transfer RNA | tRNA(Phe) | | | RF00005 | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 |
5 | 4WOI|1|DW | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
6 | 5NDK|1|X1 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
7 | 4V9H|1|AV | Transfer RNA | PE hybrid state tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
8 | 3L0U|1|A | Transfer RNA | Unmodified tRNAPhe | Escherichia coli | Bacteria | RF00005 | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-ray diffraction | 3 | 2010-03-16 |
9 | 2ZM5|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
10 | 5NDK|1|X4 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
11 | 4V5R|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
12 | 4V9D|1|BV | Transfer RNA | phenylalanine specific transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
13 | 4V5R|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
14 | 6QNR|1|2K | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
15 | 4V5P|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
16 | 4V5P|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
17 | 2ZXU|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
18 | 4V6F|1|CC | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
19 | 5NDJ|1|X1 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
20 | 6QNR|1|2L | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
21 | 5NDJ|1|X4 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
22 | 4WQU|1|BW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
23 | 4V5S|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
24 | 4W2E|1|w | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
25 | 4V5Q|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
26 | 4WQF|1|BW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
27 | 4V5S|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
28 | 4V5E|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
29 | 5J4B|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
30 | 6C5L|1|AV | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
31 | 6CFJ|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
32 | 4V5E|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
33 | 5W4K|1|1y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
34 | 4V5J|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
35 | 4V5Q|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
36 | 5WIT|1|1w | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
37 | 6C5L|1|CV | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
38 | 6CFJ|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
39 | 6CFJ|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
40 | 5J4C|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
41 | 5WIS|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
42 | 5J4C|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
43 | 4V6F|1|BC | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
44 | 4WQU|1|DW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
45 | 4V5D|1|CV | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
46 | 4V5D|1|AV | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
47 | 6CFJ|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
48 | 5WIS|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
49 | 4WT1|1|1K | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
50 | 5J4B|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
51 | 5NDK|1|W1 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
52 | 5J4C|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
53 | 4V51|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
54 | 4WQF|1|DW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
55 | 5J4B|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
56 | 4WT1|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
57 | 4V5J|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
58 | 4V9C|1|AV | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
59 | 5J4B|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
60 | 5J4C|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
61 | 5W4K|1|1w | Transfer RNA | tRNA, A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
62 | 5NDK|1|W4 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
63 | 6ND5|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
64 | 4WOI|1|AX | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
65 | 4W2G|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
66 | 4WQR|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
67 | 5WIS|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
68 | 5WIT|1|2w | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
69 | 5DOY|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
70 | 5W4K|1|2y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
71 | 2ZM5|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
72 | 4Y4P|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
73 | 4V9D|1|AV | Transfer RNA | phenylalanine specific transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
74 | 4Z3S|1|1y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
75 | 4WSD|1|1K | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
76 | 5DOY|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
77 | 4WT1|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
78 | 4V5S|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
79 | 5DOY|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
80 | 4V51|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
81 | 6ND5|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
82 | 4W2I|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
83 | 4WSD|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
84 | 4V6F|1|BD | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
85 | 4W2I|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
86 | 4Z3S|1|2y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
87 | 4Z3S|1|1w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
88 | 5W4K|1|2w | Transfer RNA | tRNA, A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
89 | 4WQR|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
90 | 1VY4|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
91 | 4V5S|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
92 | 6ND5|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
93 | 4WPO|1|BY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
94 | 4Y4P|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
95 | 4WRO|1|1K | Transfer RNA | tRNA-Phe, RNA (30-MER) | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
96 | 4W2G|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
97 | 4V5D|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
98 | 6UO1|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
99 | 4V5L|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
100 | 6UO1|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
101 | 4WSD|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
102 | 4W2I|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
103 | 4V5D|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
104 | 4W2F|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
105 | 4Y4P|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
106 | 5NDJ|1|W1 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
107 | 4Z3S|1|2w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
108 | 4WT1|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
109 | 6UO1|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
110 | 4W2I|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
111 | 1VY4|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
112 | 4V5D|1|AY | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
113 | 4V5E|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
114 | 6QNR|1|1K | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
115 | 5NDJ|1|W4 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
116 | 4WZO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
117 | 4WPO|1|DY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
118 | 4W2G|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
119 | 4V5J|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
120 | 4V5G|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
121 | 6UO1|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
122 | 5WIS|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
123 | 4V5G|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
124 | 4V5D|1|CY | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
125 | 6QNR|1|3L | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
126 | 4V5J|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
127 | 2ZXU|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
128 | 4V5Q|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
129 | 4V5Q|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
130 | 6QNR|1|1L | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
131 | 4WQR|1|1K | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
132 | 5NDK|1|V4 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
133 | 4W2G|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
134 | 4V6F|1|CD | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
135 | 5NDJ|1|V4 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
136 | 5WIT|1|1y | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
137 | 6QNR|1|5K | Transfer RNA | E. coli tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
138 | 4WZO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
139 | 6QNR|1|3K | Transfer RNA | E. coli tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | X-ray diffraction | 3.1 | 2019-06-19 |
140 | 6ND5|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
141 | 4V5G|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
142 | 4W2F|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
143 | 4Y4P|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
144 | 1VY7|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
145 | 6C5L|1|CW | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
146 | 6C5L|1|AW | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
147 | 5DOY|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
148 | 1VY5|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
149 | 1VY4|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
150 | 4V6F|1|CB | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
151 | 5WIT|1|2y | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
152 | 4WSD|1|1L | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
153 | 4WRO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
154 | 5NDK|1|V1 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
155 | 4V5C|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
156 | 4V5G|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
157 | 4W2F|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
158 | 4WRO|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
159 | 4V5P|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
160 | 4W2F|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
161 | 4V5R|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
162 | 4V5C|1|CY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
163 | 4WPO|1|BW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
164 | 4WRO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
165 | 4V5R|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
166 | 4V5C|1|AY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
167 | 4V6F|1|BB | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
168 | 4V5P|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
169 | 1VY7|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
170 | 5NDJ|1|V1 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
171 | 1VY5|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
172 | 4P6F|1|QW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
173 | 1VY4|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
174 | 4V5E|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
175 | 6UCQ|1|1y | Transfer RNA | P-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome recycling complex | X-ray diffraction | 3.5 | 2019-12-25 |
176 | 4V97|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
177 | 4V4I|1|z | Transfer RNA | P-site PHE-tRNA, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-ray diffraction | 3.71 | 2014-07-09 |
178 | 4P6F|1|XW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
179 | 1VY5|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
180 | 4V5C|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
181 | 1VY5|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
182 | 6UCQ|1|1x | Transfer RNA | P-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome recycling complex | X-ray diffraction | 3.5 | 2019-12-25 |
183 | 4WQR|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
184 | 4V9I|1|AW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
185 | 4V9I|1|CW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
186 | 4WPO|1|DW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
187 | 4V97|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
188 | 4V5L|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
189 | 4W2H|1|AY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
190 | 4V9C|1|CV | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
191 | 4V8J|1|AW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
192 | 4WQU|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
193 | 4W2H|1|CY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
194 | 6UCQ|1|2y | Transfer RNA | P-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome recycling complex | X-ray diffraction | 3.5 | 2019-12-25 |
195 | 4V8J|1|CW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
196 | 4W2E|1|x | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
197 | 4V4Y|1|AD | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
198 | 4WQU|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
199 | 4V4Y|1|AC | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
200 | 4WQF|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
201 | 6UCQ|1|2x | Transfer RNA | P-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome recycling complex | X-ray diffraction | 3.5 | 2019-12-25 |
202 | 4WQF|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
203 | 4V4Y|1|AB | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
204 | 6YSS|1|w | Transfer RNA | P-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state | Electron microscopy | 2.6 | 2020-08-19 |
205 | 6AZ1|1|2 | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
206 | 6AZ1|1|4 | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
207 | 3R8O|1|V | | phenylalanine specific transfer RNA, messenger RNA | | | | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2011-06-01 |
208 | 6WDE|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
209 | 3R8N|1|V | | phenylalanine specific transfer RNA, messenger RNA | | | | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2011-06-01 |
210 | 5AFI|1|y | Transfer RNA | A/T-site Phe-tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
211 | 6WDD|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | Electron microscopy | 3.2 | 2020-07-01 |
212 | 5UYM|1|Y | Transfer RNA | Phe-tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
213 | 5UQ8|1|z | Transfer RNA | E-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation) | Electron microscopy | 3.2 | 2018-03-07 |
214 | 6WNW|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA | Electron microscopy | 3.2 | 2020-06-24 |
215 | 5WDT|1|y | Transfer RNA | tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
216 | 5WFS|1|y | Transfer RNA | Phe-tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
217 | 6WDG|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B) | Electron microscopy | 3.3 | 2020-07-01 |
218 | 6YSR|1|w | Transfer RNA | P-site fMet-Phe-tRNA(Phe), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the P+9 stalled ribosome complex | Electron microscopy | 3.1 | 2020-08-19 |
219 | 6WDF|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A) | Electron microscopy | 3.3 | 2020-07-01 |
220 | 6VWL|1|5 | Transfer RNA | tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation) | Electron microscopy | 3.1 | 2020-06-03 |
221 | 5WE4|1|y | Transfer RNA | Phe-tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu wt complex with GppNHp | Electron microscopy | 3.1 | 2018-04-25 |
222 | 6YST|1|w | Transfer RNA | P/E-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state | Electron microscopy | 3.2 | 2020-08-19 |
223 | 6ZTO|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 1 | Electron microscopy | 3 | 2020-09-23 |
224 | 6ZTP|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 6 | Electron microscopy | 3 | 2020-09-16 |
225 | 6ZU1|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 2 | Electron microscopy | 3 | 2020-09-16 |
226 | 2JL7|1|V | | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | | | | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 |
227 | 2JL5|1|V | | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | | | | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 |
228 | 2JL7|1|W | | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | | | | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 |
229 | 2JL5|1|W | | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | | | | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 |
230 | 3JCE|1|6 | Transfer RNA | tRNA, mRNA | synthetic construct | Synthetic | RF00005 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
231 | 6BU8|1|Y | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
232 | 5UQ7|1|z | Transfer RNA | E-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation) | Electron microscopy | 3.5 | 2018-03-07 |
233 | 6WD5|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | Electron microscopy | 3.6 | 2020-07-08 |
234 | 6WD3|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | Electron microscopy | 3.6 | 2020-07-08 |
235 | 5UYL|1|Y | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
236 | 6WDK|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | Electron microscopy | 3.6 | 2020-07-08 |
237 | 6WD2|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | Electron microscopy | 3.6 | 2020-07-08 |
238 | 6WDM|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | Electron microscopy | 3.6 | 2020-07-01 |
239 | 5IQR|1|4 | Transfer RNA | E-site tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
240 | 5WE6|1|y | Transfer RNA | Phe-tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | Electron microscopy | 3.4 | 2018-04-25 |
241 | 5WFK|1|y | Transfer RNA | Phe-tRNA-Phe, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | Electron microscopy | 3.4 | 2018-05-02 |
242 | 6VWM|1|5 | Transfer RNA | tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I) | Electron microscopy | 3.4 | 2020-06-03 |
243 | 6VWN|1|5 | Transfer RNA | tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II) | Electron microscopy | 3.4 | 2020-06-03 |
244 | 6WD8|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | Electron microscopy | 3.7 | 2020-07-08 |
245 | 6WD6|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | Electron microscopy | 3.7 | 2020-07-08 |
246 | 6WD9|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | Electron microscopy | 3.7 | 2020-07-08 |
247 | 6WDJ|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | Electron microscopy | 3.7 | 2020-07-01 |
248 | 6WDL|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | Electron microscopy | 3.7 | 2020-07-01 |
249 | 6WD4|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | Electron microscopy | 3.7 | 2020-07-08 |
250 | 6WDA|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | Electron microscopy | 3.8 | 2020-07-08 |
251 | 6ZTM|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in collided state without NusG | Electron microscopy | 3.3 | 2020-09-16 |
252 | 5WF0|1|y | Transfer RNA | Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | Electron microscopy | 3.6 | 2018-05-02 |
253 | 6O9J|1|v | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | 70S Elongation Competent Ribosome | Electron microscopy | 3.9 | 2019-05-29 |
254 | 5UYK|1|Y | Transfer RNA | tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
255 | 6YSU|1|w | Transfer RNA | P-site tRNAPhe, RNA (5'-R(P*AP*UP*GP*UP*UP*C)-3') | Escherichia coli | Bacteria | RF00005 | Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state | Electron microscopy | 3.7 | 2020-08-19 |
256 | 5OT7|1|2 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Elongation factor G-ribosome complex captures in the absence of inhibitors. | Electron microscopy | 3.8 | 2018-02-14 |
257 | 6WD7|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | Electron microscopy | 3.9 | 2020-07-08 |
258 | 5KPX|1|30 | Transfer RNA | A-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
259 | 5KPW|1|30 | Transfer RNA | A-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
260 | 3J73|1|S5 | | A/P tRNA, Messenger RNA | | | | Structure of the translating mammalian ribosome-Sec61 complex | Electron microscopy | 3.9 | 2014-06-18 |
261 | 1VX2|1|5 | | A/P tRNA, Messenger RNA | | | | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | Electron microscopy | 3.9 | 2014-06-18 |
262 | 6ZTJ|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA) | Electron microscopy | 3.4 | 2020-09-16 |
263 | 6Q95|1|8 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome | Electron microscopy | 3.7 | 2019-02-27 |
264 | 3JCE|1|9 | Transfer RNA | tRNA | synthetic construct | Synthetic | RF00005 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
265 | 6WDI|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | Electron microscopy | 4 | 2020-07-01 |
266 | 6WDB|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | Electron microscopy | 4 | 2020-07-01 |
267 | 6ZTL|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in collided state bound to NusG | Electron microscopy | 3.5 | 2020-09-16 |
268 | 5KPV|1|30 | Transfer RNA | A-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II) | Electron microscopy | 4.1 | 2016-09-28 |
269 | 5IQR|1|6 | Transfer RNA | A/T tRNA(Phe), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
270 | 6ZTN|1|AX | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) | Electron microscopy | 3.9 | 2020-09-16 |
271 | 6WDC|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B) | Electron microscopy | 4.2 | 2020-07-01 |
272 | 6WDH|1|7 | Transfer RNA | tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1) | Electron microscopy | 4.3 | 2020-07-01 |
273 | 3JCD|1|8 | Transfer RNA | tRNA, mRNA | synthetic construct | Synthetic | RF00005 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 |
274 | 6ZTN|1|AZ | Transfer RNA | Phe-NH-tRNA(Phe) A-site, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) | Electron microscopy | 3.9 | 2020-09-16 |
275 | 3JCD|1|9 | Transfer RNA | tRNA | synthetic construct | Synthetic | RF00005 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 |
276 | 3JBV|1|V | Transfer RNA | RNA (76-MER), RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3') | Escherichia coli | Bacteria | RF00005 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
277 | 4V69|1|AW | Transfer RNA | P-site tRNA fMet (Unmodified bases except for Thymine 54) | Escherichia coli | Bacteria | RF00005 | Ternary complex-bound E.coli 70S ribosome. | Electron microscopy | 6.7 | 2014-07-09 |
278 | 4V7D|1|BV | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | Electron microscopy | 7.6 | 2014-07-09 |
279 | 4V7D|1|BW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | Electron microscopy | 7.6 | 2014-07-09 |
280 | 4V7C|1|AW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | Electron microscopy | 7.6 | 2014-07-09 |
281 | 4V7C|1|AV | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | Electron microscopy | 7.6 | 2014-07-09 |
282 | 4V6K|1|BB | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 8.25 | 2014-07-09 |
283 | 4V6K|1|BE | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 8.25 | 2014-07-09 |
284 | 3J46|1|a | Transfer RNA | A-tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SecY protein translocation channel in action | Electron microscopy | 10.1 | 2013-10-23 |
285 | 4V6L|1|AE | Transfer RNA | A/T-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 13.2 | 2014-07-09 |
286 | 4V6L|1|AB | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 13.2 | 2014-07-09 |