#IFECompound(s)RNA source organismTitleMethodResolutionDate
14KZY|1|i (rep)18S Ribosomal RNAOryctolagus cuniculusRabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-RAY DIFFRACTION7.012013-07-24
24KZZ|1|i18S Ribosomal RNAOryctolagus cuniculusRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.032013-07-24
34KZX|1|i18S ribosomal RNAOryctolagus cuniculusRabbit 40S ribosomal subunit in complex with eIF1.X-RAY DIFFRACTION7.812013-07-24
46R5Q|1|K18S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
56R6P|1|K18S rRNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
66D9J|1|218S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
75LZS|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
81VX5|1|218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.52014-06-18
93J74|1|S218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.52014-06-18
106MTD|1|918S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
115LZV|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
126D90|1|218S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
136MTC|1|918S rRNAOryctolagus cuniculusRabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
146MTE|1|918S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
156GZ5|1|B118S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
165LZZ|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
175LZW|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
185LZX|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
196GZ3|1|B118S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
206GZ4|1|B118S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.62018-12-05
215LZT|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
226MTB|1|918S rRNAOryctolagus cuniculusRabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.62018-11-21
236HCJ|1|A218S ribosomal RNAOryctolagus cuniculusStructure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.82018-10-17
241VX2|1|218S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.92014-06-18
253J73|1|S218S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.92014-06-18
266R6G|1|K18S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.72019-07-10
275LZU|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
286HCF|1|A118S ribosomal RNAOryctolagus cuniculusStructure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.92018-10-17
296R7Q|1|K18S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.92019-07-10
303JAH|1|918S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
315LZY|1|918S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.992016-11-30
325FLX|1|118S RRNAOryctolagus cuniculusMammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.92015-12-23
333JAG|1|918S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
343JAI|1|918S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
355K0Y|1|A18S ribosomal RNAOryctolagus cuniculusm48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceELECTRON MICROSCOPY5.82016-07-13
366HCQ|1|A218S ribosomal RNAOryctolagus cuniculusStructure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.52018-10-17
376HCM|1|A118S ribosomal RNAOryctolagus cuniculusStructure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.82018-10-17
384UJE|1|B118S Ribosomal RNAOryctolagus cuniculusRegulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.92014-07-16
393JAN|1|S218S ribosomal RNAOryctolagus cuniculusStructure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
403JAJ|1|S218S ribosomal RNAOryctolagus cuniculusStructure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
414UJD|1|C118S Ribosomal RNAOryctolagus cuniculusmammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.92014-07-30
424D61|1|118S RRNAOryctolagus cuniculusCryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-03-04
434D5L|1|118S RRNA 2Oryctolagus cuniculusCryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-02-04
444UJC|1|C118S RIBOSOMAL RNAOryctolagus cuniculusmammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.52014-07-30

Release history

Release3.823.833.843.853.863.873.883.893.903.91
Date2019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#Class_IFEPDBIDAssemblyLSU_23SLSU_5SmRNAtRNA/stRNA_OccupancyA_tRNA_anticodonProtein_factors
14D61|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
24KZZ|1|iRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.031797
34KZY|1|iRabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-RAY DIFFRACTION7.011840
44KZX|1|iRabbit 40S ribosomal subunit in complex with eIF1.X-RAY DIFFRACTION7.811797
54D5L|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
66HCQ|1|A2Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.51740
75K0Y|1|Am48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceELECTRON MICROSCOPY5.81776
83J74|1|S2Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.51742
91VX5|1|2Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.51742
103J73|1|S2Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.91742
111VX2|1|2Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.91742
126D90|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.21697
136HCF|1|A1Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.91732
146HCJ|1|A2Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.81740
156R6P|1|KStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.11698
166R6G|1|KStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.71698
176R5Q|1|KStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY31698
186R7Q|1|KStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.91698
196MTC|1|9Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.41664
206MTB|1|9Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.61664
215LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
225LZT|1|9Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
235LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
245LZU|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
255LZW|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
265LZX|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
275LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
285LZY|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
296GZ5|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.51708
303JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
313JAG|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
323JAI|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
333JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
343JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
354UJD|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.91742
364UJC|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.51742
374UJE|1|B1Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.91742
386D9J|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.21697
396HCM|1|A1Structure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.81732
406MTE|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.41664
416MTD|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.31692
426GZ4|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.61708
436GZ3|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.61708
445FLX|1|1Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708