Equivalence class NR_all_26052.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5NEW|1|H (rep) | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-ray diffraction | 2.51 | 2017-10-04 | |||
| 2 | 6HYU|1|B | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 2019-08-28 | |||
| 3 | 6NUT|1|D | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Ebola virus nucleoprotein - RNA complex | Electron microscopy | 3.1 | 2019-05-01 | |||
| 4 | 6H5Q|1|R | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | Electron microscopy | 3.3 | 2019-03-13 | |||
| 5 | 3J9B|1|K+ 3J9B|1|L | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | synthetic construct | Electron cryo-microscopy of an RNA polymerase | Electron microscopy | 4.3 | 2015-02-18 | |||
| 6 | 3J9B|1|D | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Electron cryo-microscopy of an RNA polymerase | Electron microscopy | 4.3 | 2015-02-18 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_26052.5 | NR_all_26052.4 | 3.89 | (5) 6NUT|1|D, 6H5Q|1|R, 5NEW|1|H, 3J9B|1|K+3J9B|1|L, 3J9B|1|D | (1) 6HYU|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_26052.5 | NR_all_51587.1 | 3.98 | (2) 3J9B|1|D, 3J9B|1|K+3J9B|1|L | (4) 6NUT|1|D, 6H5Q|1|R, 5NEW|1|H, 6HYU|1|B | (0) |
| NR_all_26052.5 | NR_all_56199.1 | 3.98 | (1) 5NEW|1|H | (5) 6H5Q|1|R, 6NUT|1|D, 3J9B|1|K+3J9B|1|L, 6HYU|1|B, 3J9B|1|D | (0) |
| NR_all_26052.5 | NR_all_60226.1 | 3.98 | (1) 6H5Q|1|R | (5) 3J9B|1|K+3J9B|1|L, 6HYU|1|B, 3J9B|1|D, 5NEW|1|H, 6NUT|1|D | (0) |
| NR_all_26052.5 | NR_all_61996.1 | 3.98 | (1) 6NUT|1|D | (5) 3J9B|1|K+3J9B|1|L, 6H5Q|1|R, 3J9B|1|D, 5NEW|1|H, 6HYU|1|B | (0) |
| NR_all_26052.5 | NR_all_68616.1 | 3.98 | (1) 6HYU|1|B | (5) 6H5Q|1|R, 3J9B|1|D, 5NEW|1|H, 6NUT|1|D, 3J9B|1|K+3J9B|1|L | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6NUT|1|D | Ebola virus nucleoprotein - RNA complex | ELECTRON MICROSCOPY | 3.1 | 6 |
| 2 | 6H5Q|1|R | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | ELECTRON MICROSCOPY | 3.3 | 6 |
| 3 | 3J9B|1|D | Electron cryo-microscopy of an RNA polymerase | ELECTRON MICROSCOPY | 4.3 | 5 |
| 4 | 3J9B|1|K+3J9B|1|L | Electron cryo-microscopy of an RNA polymerase | ELECTRON MICROSCOPY | 4.3 | 5 |
| 5 | 6HYU|1|B | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 6 |
| 6 | 5NEW|1|H | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 6 |