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Equivalence class NR_all_30457.11 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16J6G|1|D (rep)U5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.22019-04-24
26BK8|1|5U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
35GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
45Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
56EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
65YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
76J6H|1|DU5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.62019-04-24
85LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
95ZWM|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
105GAN|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromElectron microscopy3.72016-01-27
115MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
126J6N|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.862019-04-24
136J6Q|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.72019-04-24
145WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
155MQ0|1|5U5 spliceosomal RNASaccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence, 5'-EXON OF UBC4 PRE-MRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
165GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.72016-02-03
175ZWO|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
183JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.82016-02-24
195LQW|1|5U5 spliceosomal RNAU5 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00020yeast activated spliceosomeElectron microscopy5.82016-10-05
205NRL|1|5U5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a pre-catalytic spliceosomeElectron microscopy7.22017-05-31
215LJ5|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release3.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_30457.11NR_all_30457.103.71(17) 5LJ5|1|U, 5ZWM|1|B, 5LJ3|1|U, 5YLZ|1|B, 5GMK|1|D, 5Y88|1|B, 5GAN|1|U, 5WSG|1|D, 5GAM|1|U, 5NRL|1|5, 6EXN|1|5, 3JCM|1|F, 5MQ0|1|5, 5MPS|1|5, 6BK8|1|5, 5LQW|1|5, 5ZWO|1|B(4) 6J6G|1|D, 6J6Q|1|D, 6J6N|1|D, 6J6H|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_30457.11NR_all_30457.123.99(14) 6EXN|1|5, 6J6H|1|D, 5GMK|1|D, 5LJ5|1|U, 5WSG|1|D, 5YLZ|1|B, 6J6G|1|D, 6J6Q|1|D, 5LJ3|1|U, 5MQ0|1|5, 5Y88|1|B, 6BK8|1|5, 6J6N|1|D, 5MPS|1|5(7) 5NRL|1|5, 5ZWO|1|B, 5LQW|1|5, 5ZWM|1|B, 3JCM|1|F, 5GAN|1|U, 5GAM|1|U(0)
NR_all_30457.11NR_all_71335.13.99(4) 3JCM|1|F, 5NRL|1|5, 5ZWM|1|B, 5ZWO|1|B(17) 5GAN|1|U, 5GAM|1|U, 6J6Q|1|D, 6J6N|1|D, 6J6H|1|D, 5YLZ|1|B, 5Y88|1|B, 5WSG|1|D, 5MQ0|1|5, 5LJ3|1|U, 5GMK|1|D, 6EXN|1|5, 6BK8|1|5, 5LQW|1|5, 5LJ5|1|U, 6J6G|1|D, 5MPS|1|5(0)
NR_all_30457.11NR_all_97263.13.99(3) 5GAM|1|U, 5LQW|1|5, 5GAN|1|U(18) 6EXN|1|5, 3JCM|1|F, 6J6N|1|D, 5NRL|1|5, 5MPS|1|5, 5ZWO|1|B, 5YLZ|1|B, 6J6H|1|D, 5LJ3|1|U, 5Y88|1|B, 5GMK|1|D, 6J6Q|1|D, 5ZWM|1|B, 5LJ5|1|U, 6BK8|1|5, 5MQ0|1|5, 6J6G|1|D, 5WSG|1|D(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JCM|1|FCryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113
25ZWM|1|BCryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4175
35ZWO|1|BCryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9175
45NRL|1|5Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.2170
56EXN|1|5Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
66J6H|1|DCryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6179
76J6G|1|DCryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2179
86J6N|1|DCryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86179
96J6Q|1|DCryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7179
106BK8|1|5S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
115YLZ|1|BCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
125WSG|1|DCryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
135GMK|1|DCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
145Y88|1|BCryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
155MQ0|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17141
165MPS|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
175LJ5|1|UOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10141
185LJ3|1|UStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
195GAM|1|UFoot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
205GAN|1|UThe overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141
215LQW|1|5yeast activated spliceosomeELECTRON MICROSCOPY5.8141
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