Equivalence class NR_all_30457.12 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6J6G|1|D (rep) | U5 spliceosomal RNA | U5 snRNA, ACT1 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | Electron microscopy | 3.2 | 2019-04-24 |
| 2 | 6BK8|1|5 | U5 spliceosomal RNA | U5 snRNA, RNA (34-MER) | Saccharomyces cerevisiae | Eukarya | RF00020 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 2018-02-21 |
| 3 | 5GMK|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-Exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 4 | 5Y88|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | Electron microscopy | 3.46 | 2018-08-01 |
| 5 | 6EXN|1|5 | U5 spliceosomal RNA | U5 snRNA, Ligated exons: UBC4 mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 6 | 5YLZ|1|B | U5 spliceosomal RNA | U5 snRNA, mRNA/intron lariat, U2 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
| 7 | 6J6H|1|D | U5 spliceosomal RNA | U5 snRNA, ACT1 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | Electron microscopy | 3.6 | 2019-04-24 |
| 8 | 5LJ3|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 9 | 5MPS|1|5 | U5 spliceosomal RNA | U5 snRNA, UBC4 gene exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 10 | 6J6N|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | Electron microscopy | 3.86 | 2019-04-24 |
| 11 | 6J6Q|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | Electron microscopy | 3.7 | 2019-04-24 |
| 12 | 5WSG|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
| 13 | 5MQ0|1|5 | U5 spliceosomal RNA | Saccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence, 5'-EXON OF UBC4 PRE-MRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 4.17 | 2017-01-18 |
| 14 | 5LJ5|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Overall structure of the yeast spliceosome immediately after branching. | Electron microscopy | 10 | 2016-08-31 |
Release history
| Release | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_30457.12 | NR_all_30457.11 | 3.99 | (14) 6EXN|1|5, 5GMK|1|D, 5WSG|1|D, 6J6Q|1|D, 5MQ0|1|5, 6J6N|1|D, 5MPS|1|5, 6BK8|1|5, 5YLZ|1|B, 6J6H|1|D, 5LJ5|1|U, 5Y88|1|B, 6J6G|1|D, 5LJ3|1|U | (0) | (7) 5ZWM|1|B, 5NRL|1|5, 5GAM|1|U, 5LQW|1|5, 3JCM|1|F, 5ZWO|1|B, 5GAN|1|U |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6EXN|1|5 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 171 |
| 2 | 6J6H|1|D | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 179 |
| 3 | 6J6G|1|D | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | ELECTRON MICROSCOPY | 3.2 | 179 |
| 4 | 6J6N|1|D | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | ELECTRON MICROSCOPY | 3.86 | 179 |
| 5 | 6J6Q|1|D | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | ELECTRON MICROSCOPY | 3.7 | 179 |
| 6 | 6BK8|1|5 | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 103 |
| 7 | 5YLZ|1|B | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 117 |
| 8 | 5WSG|1|D | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 117 |
| 9 | 5GMK|1|D | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 |
| 10 | 5Y88|1|B | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | ELECTRON MICROSCOPY | 3.46 | 117 |
| 11 | 5LJ5|1|U | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 141 |
| 12 | 5LJ3|1|U | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 |
| 13 | 5MQ0|1|5 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 141 |
| 14 | 5MPS|1|5 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 141 |