BGSU RNA Site //

Equivalence class NR_all_30457.12 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16J6G|1|D (rep)U5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.22019-04-24
26BK8|1|5U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
35GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
45Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
56EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
65YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
76J6H|1|DU5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.62019-04-24
85LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
95MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
106J6N|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.862019-04-24
116J6Q|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.72019-04-24
125WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
135MQ0|1|5U5 spliceosomal RNASaccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence, 5'-EXON OF UBC4 PRE-MRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
145LJ5|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release3.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.168
Date2019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_30457.12NR_all_30457.113.99(14) 6EXN|1|5, 5GMK|1|D, 5MQ0|1|5, 6BK8|1|5, 6J6Q|1|D, 6J6N|1|D, 5MPS|1|5, 6J6H|1|D, 5LJ5|1|U, 5YLZ|1|B, 5Y88|1|B, 6J6G|1|D, 5LJ3|1|U, 5WSG|1|D(0) (7) 5LQW|1|5, 5GAN|1|U, 5ZWO|1|B, 5ZWM|1|B, 5GAM|1|U, 5NRL|1|5, 3JCM|1|F

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_30457.12NR_all_30457.133.169(14) 6EXN|1|5, 6BK8|1|5, 5YLZ|1|B, 5Y88|1|B, 5WSG|1|D, 5MQ0|1|5, 5MPS|1|5, 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D, 6J6Q|1|D, 6J6N|1|D, 6J6H|1|D, 6J6G|1|D(0) (1) 7B9V|1|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16EXN|1|5Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
26J6H|1|DCryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6179
36J6G|1|DCryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2179
46J6N|1|DCryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86179
56J6Q|1|DCryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7179
66BK8|1|5S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
75YLZ|1|BCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
85WSG|1|DCryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
95GMK|1|DCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
105Y88|1|BCryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
115LJ5|1|UOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10141
125LJ3|1|UStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
135MQ0|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17141
145MPS|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141