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Equivalence class NR_all_30457.13 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17B9V|1|5 (rep)U5 spliceosomal RNAU5 snRNA, 5' exon of UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 boundElectron microscopy2.82021-03-10
26J6G|1|DU5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.22019-04-24
36BK8|1|5U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
45GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
55Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
66EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
75YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
86J6H|1|DU5 spliceosomal RNAU5 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.62019-04-24
95LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
105MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
116J6N|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.862019-04-24
126J6Q|1|DU5 spliceosomal RNAU5 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.72019-04-24
135WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
145MQ0|1|5U5 spliceosomal RNASaccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence, 5'-EXON OF UBC4 PRE-MRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
155LJ5|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release3.169
Date2021-03-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_30457.13NR_all_30457.123.169(14) 6J6Q|1|D, 6J6N|1|D, 6J6H|1|D, 6J6G|1|D, 6EXN|1|5, 6BK8|1|5, 5YLZ|1|B, 5Y88|1|B, 5WSG|1|D, 5MQ0|1|5, 5MPS|1|5, 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D(1) 7B9V|1|5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_30457.13NR_all_30457.143.170(15) 6BK8|1|5, 5YLZ|1|B, 5Y88|1|B, 5WSG|1|D, 5MQ0|1|5, 5MPS|1|5, 5LJ5|1|U, 5LJ3|1|U, 5GMK|1|D, 7B9V|1|5, 6J6Q|1|D, 6J6N|1|D, 6J6H|1|D, 6J6G|1|D, 6EXN|1|5(0) (1) 7DCO|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17B9V|1|5Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 boundELECTRON MICROSCOPY2.8178
26EXN|1|5Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
36J6H|1|DCryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6179
46J6G|1|DCryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2179
56J6N|1|DCryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86179
66J6Q|1|DCryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7179
76BK8|1|5S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
85YLZ|1|BCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
95WSG|1|DCryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
105GMK|1|DCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
115Y88|1|BCryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
125LJ5|1|UOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10141
135LJ3|1|UStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
145MQ0|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17141
155MPS|1|5Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
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