#IFECompound(s)RNA source organismTitleMethodResolutionDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.92006-12-12
26UPZ|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.12020-06-10
32NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.62006-12-19
42E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.412006-12-19
56UQ0|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.562020-06-10
62E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.952006-12-12
72NVZ|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.32006-12-19
81SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.612004-03-02
91R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.52004-11-16
102YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.42007-04-24
111R9S|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.252004-11-16
126H67|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.62018-08-29
136H68|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49ELECTRON MICROSCOPY4.62018-08-29
145VVR|1|RRNASaccharomyces cerevisiaeTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.82017-11-22
155VVS|1|RRNASaccharomyces cerevisiaeRNA pol II elongation complexELECTRON MICROSCOPY6.42017-11-22

Release history

Release3.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.183
Date2020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_34359.4NR_all_34359.33.130(13) 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R, 1R9S|1|R, 6H68|1|R, 6H67|1|R, 5VVS|1|R, 5VVR|1|R, 2YU9|1|R, 2NVZ|1|R, 2NVX|1|R(2) 6UPZ|1|R, 6UQ0|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_34359.4NR_all_34359.53.184(15) 1SFO|1|R, 2NVZ|1|R, 6H68|1|R, 1R9T|1|R, 2NVX|1|R, 6H67|1|R, 1R9S|1|R, 2NVQ|1|R, 5VVS|1|R, 2E2I|1|R, 5VVR|1|R, 6UQ0|1|R, 2E2H|1|R, 2YU9|1|R, 6UPZ|1|R(0) (3) 7KED|1|R, 7KEE|1|R, 7KEF|1|R

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11R9S|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.2510
21R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
31SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
42NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
52E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
62YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
72NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
82E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
92NVZ|1|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.310
106UQ0|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.569
116H68|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49ELECTRON MICROSCOPY4.610
126H67|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.69
135VVS|1|RRNA pol II elongation complexELECTRON MICROSCOPY6.410
145VVR|1|RTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.810
156UPZ|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.110