#IFECompound(s)RNA source organismTitleMethodResolutionDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.92006-12-12
26UPZ|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.12020-06-10
32NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.62006-12-19
42E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.412006-12-19
56UQ0|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.562020-06-10
67KEE|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.452021-06-23
72E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.952006-12-12
87KED|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.62021-06-23
92NVZ|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.32006-12-19
107KEF|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.892021-06-23
111SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.612004-03-02
121R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.52004-11-16
132YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.42007-04-24
141R9S|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.252004-11-16
156H67|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.62018-08-29
166H68|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49ELECTRON MICROSCOPY4.62018-08-29
175VVR|1|RRNASaccharomyces cerevisiaeTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.82017-11-22
185VVS|1|RRNASaccharomyces cerevisiaeRNA pol II elongation complexELECTRON MICROSCOPY6.42017-11-22

Release history

Release3.184
Date2021-06-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_34359.5NR_all_34359.43.184(15) 1R9S|1|R, 6H67|1|R, 5VVS|1|R, 5VVR|1|R, 2YU9|1|R, 2NVZ|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 6UQ0|1|R, 2E2H|1|R, 6UPZ|1|R, 1SFO|1|R, 6H68|1|R, 1R9T|1|R(3) 7KEF|1|R, 7KEE|1|R, 7KED|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15VVS|1|RRNA pol II elongation complexELECTRON MICROSCOPY6.410
26H67|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.69
37KEE|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.4510
47KED|1|RRNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.610
56UQ0|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.569
66H68|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49ELECTRON MICROSCOPY4.610
77KEF|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.8910
82NVZ|1|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.310
92E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
101R9S|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.2510
111R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
121SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
132NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
142YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
152E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
162NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
175VVR|1|RTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.810
186UPZ|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.110