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Equivalence class NR_all_35054.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13IGI|1|A (rep)Group IIC intron, 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'Tertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-ray diffraction3.122009-12-22
25J02|1|AGroup II catalytic intron D1-D4-1GROUP II INTRON LARIAT, 5' EXON ANALOG (5'-R(*CP*UP*GP*UP*UP*AP*(5MU))-3')Oceanobacillus iheyensisBacteriaRF01998Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.X-ray diffraction3.492016-12-14
34FAX|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-ray diffraction3.12012-11-14
44FAR|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-ray diffraction2.862012-11-14
54E8N|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-ray diffraction2.962012-11-14
64FAU|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-ray diffraction2.872012-11-14
74FB0|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.222012-11-14
84E8K|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-ray diffraction3.032012-11-14
94E8Q|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-ray diffraction2.842012-11-14
104Y1O|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
114Y1O|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
124E8P|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-ray diffraction3.282012-11-14
134E8T|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-ray diffraction3.342012-11-14
145J01|1|AGroup II catalytic intron D1-D4-1group II intron lariatOceanobacillus iheyensisBacteriaRF01998Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.X-ray diffraction3.392016-12-14
154FAW|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-ray diffraction2.72012-11-14
163EOH|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Refined group II intron structureX-ray diffraction3.122008-10-28
174FAQ|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-ray diffraction3.112012-11-14
184E8R|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-ray diffraction3.362012-11-14
194Y1N|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14
203G78|1|AGroup II catalytic intron D1-D4-1Group II intron, Ligated EXON productOceanobacillus iheyensisBacteriaRF01998Insight into group II intron catalysis from revised crystal structureX-ray diffraction2.82010-02-16
214E8M|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.52012-11-14
224Y1N|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14
234DS6|1|AGroup II catalytic intron D1-D4-1Mutant Group IIC IntronOceanobacillus iheyensisBacteriaRF01998Crystal structure of a group II intron in the pre-catalytic stateX-ray diffraction3.642012-04-18
243EOG|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Co-crystallization showing exon recognition by a group II intronX-ray diffraction3.392008-10-28
253BWP|1|AGroup IIC intronCrystal structure of a self-spliced group II intronX-ray diffraction3.12008-04-15
264E8V|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-ray diffraction3.992012-11-14

Release history

Release2.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.126
Date2016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_35054.3NR_all_35054.22.106(24) 4E8Q|1|A, 4E8P|1|A, 4E8N|1|A, 4E8M|1|A, 4Y1O|1|B, 4E8K|1|A, 4Y1O|1|A, 4DS6|1|A, 4Y1N|1|B, 3IGI|1|A, 4Y1N|1|A, 3G78|1|A, 4FB0|1|A, 3EOH|1|A, 4FAX|1|A, 3EOG|1|A, 4FAW|1|A, 3BWP|1|A, 4FAU|1|A, 4FAR|1|A, 4FAQ|1|A, 4E8V|1|A, 4E8T|1|A, 4E8R|1|A(2) 5J01|1|A, 5J02|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_35054.3NR_all_35054.43.127(26) 4DS6|1|A, 4E8P|1|A, 4E8V|1|A, 4FAW|1|A, 4Y1N|1|B, 3EOG|1|A, 5J02|1|A, 3IGI|1|A, 4E8N|1|A, 4E8T|1|A, 4FAU|1|A, 4Y1N|1|A, 3BWP|1|A, 5J01|1|A, 3G78|1|A, 4E8M|1|A, 4E8R|1|A, 4FAR|1|A, 4FB0|1|A, 4Y1O|1|B, 4E8K|1|A, 4E8Q|1|A, 4FAQ|1|A, 4FAX|1|A, 4Y1O|1|A, 3EOH|1|A(0) (4) 6T3K|1|A, 6T3S|1|A, 6T3R|1|A, 6T3N|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
5J01|1|A		Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.X-RAY DIFFRACTION3.39414
2
5J02|1|A		Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.X-RAY DIFFRACTION3.49414
3
3EOG|1|A		Co-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39388
4
3BWP|1|A		Crystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1356
5
3EOH|1|A		Refined group II intron structureX-RAY DIFFRACTION3.12381
6
4DS6|1|A		Crystal structure of a group II intron in the pre-catalytic stateX-RAY DIFFRACTION3.64393
7
4FAX|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1392
8
4E8R|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
9
4E8P|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
10
4E8Q|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
11
4E8N|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
12
4FB0|1|A		Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
13
4E8M|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
14
4FAW|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
15
4FAR|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
16
4FAU|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
17
3G78|1|A		Insight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
18
3IGI|1|A		Tertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12389
19
4E8T|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34388
20
4E8K|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03388
21
4FAQ|1|A		Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
22
4E8V|1|A		Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-RAY DIFFRACTION3.99389
23
4Y1O|1|B		Oceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256
24
4Y1N|1|A		Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
25
4Y1N|1|B		Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
26
4Y1O|1|A		Oceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258

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