Equivalence class NR_all_39627.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2R8S|1|R (rep) | P4-P6 RNA RIBOZYME DOMAIN | High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain | X-ray diffraction | 1.95 | 2007-12-04 | ||||
| 2 | 6D8O|1|A | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant A230U | X-ray diffraction | 2.8 | 2018-07-04 | ||
| 3 | 6D8O|1|B | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant A230U | X-ray diffraction | 2.8 | 2018-07-04 | ||
| 4 | 1HR2|1|B | P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-ray diffraction | 2.25 | 2001-04-12 | ||||
| 5 | 6BJX|1|A | Group I self-splicing intron P4-P6 domain | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-04 | ||
| 6 | 6BJX|1|B | Group I self-splicing intron P4-P6 domain | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-04 | ||
| 7 | 1HR2|1|A | P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-ray diffraction | 2.25 | 2001-04-12 | ||||
| 8 | 6D8M|1|B | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-ray diffraction | 3.7 | 2018-07-04 | ||
| 9 | 6D8M|1|A | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-ray diffraction | 3.7 | 2018-07-04 | ||
| 10 | 6D8L|1|A | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-18 | ||
| 11 | 6D8L|1|B | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-ray diffraction | 3.14 | 2018-07-18 | ||
| 12 | 6D8N|1|B | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-ray diffraction | 3.95 | 2018-07-18 | ||
| 13 | 6D8N|1|A | Group I self-splicing intron | Tetrahymena thermophila | Eukarya | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-ray diffraction | 3.95 | 2018-07-18 | ||
| 14 | 1X8W|1|A | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 15 | 1X8W|1|D | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 16 | 1X8W|1|B | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 17 | 1X8W|1|C | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 18 | 1L8V|1|B | P4-P6 RNA ribozyme domain | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-ray diffraction | 2.8 | 2002-08-23 | ||||
| 19 | 1L8V|1|A | P4-P6 RNA ribozyme domain | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-ray diffraction | 2.8 | 2002-08-23 | ||||
| 20 | 1GID|1|B | P4-P6 RNA RIBOZYME DOMAIN | synthetic construct | Synthetic | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-ray diffraction | 2.5 | 1996-12-31 | ||
| 21 | 1GID|1|A | P4-P6 RNA RIBOZYME DOMAIN | synthetic construct | Synthetic | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-ray diffraction | 2.5 | 1996-12-31 | ||
| 22 | 1GRZ|1|A | Group I catalytic intron | LSU R-RNA GROUP I INTRON | Tetrahymena thermophila | Eukarya | RF00028 | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-ray diffraction | 5 | 1998-11-24 |
| 23 | 1GRZ|1|B | Group I catalytic intron | LSU R-RNA GROUP I INTRON | Tetrahymena thermophila | Eukarya | RF00028 | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-ray diffraction | 5 | 1998-11-24 |
Release history
| Release | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_39627.3 | NR_all_39627.2 | 3.31 | (19) 1GID|1|A, 1X8W|1|A, 6D8M|1|B, 1L8V|1|B, 6D8M|1|A, 1L8V|1|A, 6BJX|1|B, 1HR2|1|B, 6BJX|1|A, 1HR2|1|A, 2R8S|1|R, 1GRZ|1|B, 1X8W|1|D, 1GRZ|1|A, 1X8W|1|C, 6D8O|1|B, 1GID|1|B, 1X8W|1|B, 6D8O|1|A | (4) 6D8N|1|A, 6D8L|1|B, 6D8L|1|A, 6D8N|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_39627.3 | NR_all_39627.4 | 3.98 | (22) 1HR2|1|B, 6D8O|1|B, 6D8L|1|A, 1L8V|1|B, 1GID|1|A, 6D8M|1|A, 1X8W|1|B, 1GRZ|1|A, 6D8N|1|A, 2R8S|1|R, 1HR2|1|A, 6D8O|1|A, 6BJX|1|B, 1L8V|1|A, 6D8L|1|B, 1X8W|1|A, 1GID|1|B, 6D8M|1|B, 1X8W|1|D, 1GRZ|1|B, 6D8N|1|B, 6BJX|1|A | (1) 1X8W|1|C | (0) |
| NR_all_39627.3 | NR_all_54845.1 | 3.98 | (1) 1X8W|1|C | (22) 6D8L|1|B, 1X8W|1|A, 1GID|1|B, 6D8M|1|B, 1X8W|1|D, 1GRZ|1|B, 6D8N|1|B, 6BJX|1|A, 1HR2|1|B, 6D8O|1|B, 6D8L|1|A, 1L8V|1|B, 1GID|1|A, 6D8M|1|A, 1X8W|1|B, 1GRZ|1|A, 6D8N|1|A, 2R8S|1|R, 1HR2|1|A, 6D8O|1|A, 6BJX|1|B, 1L8V|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2R8S|1|R | High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain | X-RAY DIFFRACTION | 1.95 | 159 |
| 2 | 1HR2|1|A | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-RAY DIFFRACTION | 2.25 | 157 |
| 3 | 1L8V|1|A | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-RAY DIFFRACTION | 2.8 | 157 |
| 4 | 1L8V|1|B | Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia | X-RAY DIFFRACTION | 2.8 | 157 |
| 5 | 1HR2|1|B | CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. | X-RAY DIFFRACTION | 2.25 | 158 |
| 6 | 6D8O|1|B | Group I self-splicing intron P4-P6 domain mutant A230U | X-RAY DIFFRACTION | 2.8 | 158 |
| 7 | 1GID|1|B | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-RAY DIFFRACTION | 2.5 | 158 |
| 8 | 6D8N|1|B | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-RAY DIFFRACTION | 3.95 | 159 |
| 9 | 6D8M|1|B | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-RAY DIFFRACTION | 3.7 | 159 |
| 10 | 6D8M|1|A | Group I self-splicing intron P4-P6 domain mutant A125U/G126U | X-RAY DIFFRACTION | 3.7 | 158 |
| 11 | 1GID|1|A | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | X-RAY DIFFRACTION | 2.5 | 158 |
| 12 | 6D8O|1|A | Group I self-splicing intron P4-P6 domain mutant A230U | X-RAY DIFFRACTION | 2.8 | 158 |
| 13 | 6D8N|1|A | Group I self-splicing intron P4-P6 domain mutant G134A/U185AA | X-RAY DIFFRACTION | 3.95 | 159 |
| 14 | 6BJX|1|A | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 |
| 15 | 6D8L|1|A | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 |
| 16 | 6D8L|1|B | Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 |
| 17 | 6BJX|1|B | Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) | X-RAY DIFFRACTION | 3.14 | 158 |
| 18 | 1GRZ|1|A | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-RAY DIFFRACTION | 5 | 247 |
| 19 | 1GRZ|1|B | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME | X-RAY DIFFRACTION | 5 | 247 |
| 20 | 1X8W|1|A | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 |
| 21 | 1X8W|1|B | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 247 |
| 22 | 1X8W|1|D | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 |
| 23 | 1X8W|1|C | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 237 |