BGSU RNA Site //

Equivalence class NR_all_41610.6 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16HA1|1|A (rep)Large subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
26HA8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
35NJT|1|ULarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
43J9W|1|BALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29
56PPF|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18
66PVK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class AElectron microscopy3.42019-09-18
76HTQ|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeElectron microscopy4.52019-10-23
86PPK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541RbgA+45SRbgA complexElectron microscopy4.42019-09-18
93J3W|1|ALarge subunit ribosomal RNAribosome RNA 23SBacillus subtilisBacteriaRF02541Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)Electron microscopy10.72013-06-12
103J3V|1|ALarge subunit ribosomal RNAribosome RNA 23SBacillus subtilisBacteriaRF02541Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)Electron microscopy13.32013-06-12

Release history

Release3.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.145
Date2019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_41610.6NR_all_41610.53.97(9) 6PVK|1|A, 6PPK|1|A, 6PPF|1|A, 6HA8|1|A, 6HA1|1|A, 5NJT|1|U, 3J9W|1|BA, 3J3W|1|A, 3J3V|1|A(1) 6HTQ|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_41610.6NR_all_41610.73.146(10) 5NJT|1|U, 3J9W|1|BA, 3J3W|1|A, 6PVK|1|A, 3J3V|1|A, 6PPK|1|A, 6PPF|1|A, 6HTQ|1|A, 6HA8|1|A, 6HA1|1|A(0) (2) 6TNN|1|U, 6TPQ|1|U

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J3V|1|AAtomic model of the immature 50S subunit from Bacillus subtilis (state I-a)ELECTRON MICROSCOPY13.32884
26PPK|1|ARbgA+45SRbgA complexELECTRON MICROSCOPY4.42658
35NJT|1|UStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82923
43J9W|1|BACryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92923
56HA8|1|ACryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52887
66HA1|1|ACryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12887
76HTQ|1|AStringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.52887
86PPF|1|ABacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42471
96PVK|1|ABacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42169
103J3W|1|AAtomic model of the immature 50S subunit from Bacillus subtilis (state II-a)ELECTRON MICROSCOPY10.72685