Equivalence class NR_all_45472.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q9A|1|4 (rep) | Transfer-messenger RNA | tmRNA | Escherichia coli | Bacteria | RF00023 | Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome | Electron microscopy | 3.7 | 2019-04-17 |
| 2 | 6Q97|1|4 | Transfer-messenger RNA | transfer-messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2019-03-13 |
| 3 | 6Q98|1|4 | Transfer-messenger RNA | transfer-messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome | Electron microscopy | 4.3 | 2019-02-27 |
| 4 | 3IZ4|1|A | Transfer-messenger RNA | Modified E. coli transfer-messenger RNA | Escherichia coli | Bacteria | RF00023 | Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB | Electron microscopy | 13.6 | 2010-10-20 |
| 5 | 4V6T|1|AV | Transfer-messenger RNA | full length transfer messenger RNA (tmRNA) | Escherichia coli | Bacteria | RF00023 | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | Electron microscopy | 8.3 | 2014-07-09 |
Release history
| Release | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_45472.4 | NR_all_08930.1 | 3.99 | (1) 6Q9A|1|4 | (4) 6Q98|1|4, 3IZ4|1|A, 6Q97|1|4, 4V6T|1|AV | (0) |
| NR_all_45472.4 | NR_all_30521.1 | 3.99 | (2) 4V6T|1|AV, 6Q98|1|4 | (3) 6Q97|1|4, 3IZ4|1|A, 6Q9A|1|4 | (0) |
| NR_all_45472.4 | NR_all_65254.1 | 3.99 | (1) 3IZ4|1|A | (4) 4V6T|1|AV, 6Q98|1|4, 6Q97|1|4, 6Q9A|1|4 | (0) |
| NR_all_45472.4 | NR_all_82437.1 | 3.99 | (1) 6Q97|1|4 | (4) 3IZ4|1|A, 6Q98|1|4, 4V6T|1|AV, 6Q9A|1|4 | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3IZ4|1|A | Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB | ELECTRON MICROSCOPY | 13.6 | 377 |
| 2 | 6Q98|1|4 | Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 4.3 | 363 |
| 3 | 4V6T|1|AV | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | ELECTRON MICROSCOPY | 8.3 | 331 |
| 4 | 6Q97|1|4 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 334 |
| 5 | 6Q9A|1|4 | Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 3.7 | 363 |