BGSU RNA Site //

Equivalence class NR_all_46995.6 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15VYC|1|i2 (rep)Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
25VYC|1|i3Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
35VYC|1|i5Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
45VYC|1|i1Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
55VYC|1|i6Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
65VYC|1|i4Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION62017-07-19
76QZP|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92019-04-24
86EK0|1|S218S ribosomal RNAHomo sapiensEukaryaHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92018-01-24
96G18|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.62018-06-06
106G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.52018-06-06
114UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.62015-06-10
126G5H|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.62018-06-06
135AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.52015-05-20
145A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.92015-07-15
156G51|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.12018-06-06
166G4S|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY42018-06-06
175OA3|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.22017-08-09
185LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.62017-04-26
196G53|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.52018-06-06
206G4W|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.52018-06-06
214V6X|1|B2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the human 80S ribosomeELECTRON MICROSCOPY52014-07-09
225T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.62017-01-25
236FEC|1|ASmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.32018-03-14
245A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.82015-12-02

Release history

Release3.713.723.733.743.75
Date2019-04-262019-05-032019-05-102019-05-172019-05-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_46995.6NR_all_46995.53.71(23) 6EK0|1|S2, 5VYC|1|i6, 5VYC|1|i5, 5VYC|1|i4, 5VYC|1|i3, 5VYC|1|i2, 5VYC|1|i1, 5T2C|1|AA, 5OA3|1|2, 5LKS|1|S2, 5AJ0|1|B1, 5A8L|1|B, 5A2Q|1|2, 4V6X|1|B2, 4UG0|1|S2, 6G5I|1|2, 6G5H|1|2, 6G53|1|2, 6G51|1|2, 6G4W|1|2, 6G4S|1|2, 6G18|1|2, 6FEC|1|A(1) 6QZP|1|S2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_46995.6NR_all_46995.73.76(24) 5VYC|1|i2, 6FEC|1|A, 6G53|1|2, 5AJ0|1|B1, 6EK0|1|S2, 6G51|1|2, 5A8L|1|B, 5VYC|1|i1, 5VYC|1|i6, 6G4W|1|2, 5A2Q|1|2, 5T2C|1|AA, 6QZP|1|S2, 5VYC|1|i5, 6G4S|1|2, 4V6X|1|B2, 5OA3|1|2, 6G5I|1|2, 5VYC|1|i4, 6G18|1|2, 4UG0|1|S2, 5LKS|1|S2, 6G5H|1|2, 5VYC|1|i3(0) (3) 6IP8|1|2m, 6IP5|1|2m, 6IP6|1|2m

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16G18|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
26G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
36G5H|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
45OA3|1|2Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.21661
55A2Q|1|2Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
64V6X|1|B2Structure of the human 80S ribosomeELECTRON MICROSCOPY51861
75VYC|1|i6Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
85VYC|1|i2Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
95VYC|1|i1Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
105VYC|1|i5Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
115VYC|1|i3Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
125VYC|1|i4Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
135T2C|1|AACryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
144UG0|1|S2STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
155LKS|1|S2Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
166FEC|1|AHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.31776
175AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
186EK0|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
196QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91707
205A8L|1|BHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
216G4S|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613
226G53|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.51659
236G51|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.11659
246G4W|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.51563