#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6C|1|D (rep)RNA (5'-R(P*AP*A)-3')synthetic constructVibrio cholerae Oligoribonuclease bound to pAAX-RAY DIFFRACTION1.622019-06-12
26N6J|1|CRNA (5'-R(P*AP*A)-3')synthetic constructHuman REXO2 bound to pAAX-RAY DIFFRACTION1.322019-06-12
36N6J|1|DRNA (5'-R(P*AP*A)-3')synthetic constructHuman REXO2 bound to pAAX-RAY DIFFRACTION1.322019-06-12
47MPM|1|B5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
57MPM|1|H5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
67MPM|1|L5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
77MPM|1|F5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
87MPM|1|J5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
97MPM|1|D5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
107MPM|1|P5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
117MPM|1|N5'-phosphorylated AABartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.952021-09-15
126P7Q|1|ERNA (5'-R(P*AP*A)-3')Escherichia coliStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662019-12-25
136P7Q|1|FRNA (5'-R(P*AP*A)-3')Escherichia coliStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662019-12-25
146P7Q|1|DRNA (5'-R(P*AP*A)-3')Escherichia coliStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662019-12-25
156RCL|1|CRNA (5'-R(P*AP*A)-3')synthetic constructCrystal structure of REXO2-D199A-AAX-RAY DIFFRACTION1.972019-10-09
165JJU|1|CRNA (5'-R(P*AP*A)-3')synthetic constructCrystal structure of Rv2837c complexed with 5'-pApA and 5'-AMPX-RAY DIFFRACTION2.312016-05-04
174EJT|1|G5'-R(*AP*A)-3'Staphylococcus epidermidis TcaR in complex with RNAX-RAY DIFFRACTION32013-06-05
183J0O|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY92011-11-16
193J0L|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.82011-11-16
203J0Q|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2ELECTRON MICROSCOPY10.62011-11-16
213J0P|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1ELECTRON MICROSCOPY10.62011-11-16

Release history

Release3.196
Date2021-09-15

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14EJT|1|GStaphylococcus epidermidis TcaR in complex with RNAX-RAY DIFFRACTION32
23J0O|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY92
33J0P|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1ELECTRON MICROSCOPY10.62
43J0Q|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2ELECTRON MICROSCOPY10.62
53J0L|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.82
65JJU|1|CCrystal structure of Rv2837c complexed with 5'-pApA and 5'-AMPX-RAY DIFFRACTION2.312
76P7Q|1|EStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662
86P7Q|1|DStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662
96RCL|1|CCrystal structure of REXO2-D199A-AAX-RAY DIFFRACTION1.972
106P7Q|1|FStructure of E. coli MS115-1 NucC, 5'-pApA bound formX-RAY DIFFRACTION1.662
117MPM|1|LBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
126N6C|1|DVibrio cholerae Oligoribonuclease bound to pAAX-RAY DIFFRACTION1.622
137MPM|1|HBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
147MPM|1|BBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
156N6J|1|CHuman REXO2 bound to pAAX-RAY DIFFRACTION1.323
166N6J|1|DHuman REXO2 bound to pAAX-RAY DIFFRACTION1.323
177MPM|1|JBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
187MPM|1|FBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
197MPM|1|PBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
207MPM|1|DBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953
217MPM|1|NBartonella henselae NrnC bound to pAAX-RAY DIFFRACTION1.953