Equivalence class NR_all_53003.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6C|1|D (rep) | RNA (5'-R(P*AP*A)-3') | synthetic construct | Vibrio cholerae Oligoribonuclease bound to pAA | X-ray diffraction | 1.62 | 2019-06-12 | |||
| 2 | 6N6J|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Human REXO2 bound to pAA | X-ray diffraction | 1.32 | 2019-06-12 | |||
| 3 | 6N6J|1|D | RNA (5'-R(P*AP*A)-3') | synthetic construct | Human REXO2 bound to pAA | X-ray diffraction | 1.32 | 2019-06-12 | |||
| 4 | 7MPM|1|B | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 5 | 7MPM|1|H | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 6 | 7MPM|1|L | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 7 | 7MPM|1|F | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 8 | 7MPM|1|J | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 9 | 7MPM|1|D | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 10 | 7MPM|1|P | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 11 | 7MPM|1|N | 5'-phosphorylated AA | synthetic construct | Bartonella henselae NrnC bound to pAA | X-ray diffraction | 1.95 | 2021-09-15 | |||
| 12 | 6P7Q|1|E | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 13 | 6P7Q|1|F | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 14 | 6P7Q|1|D | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 15 | 6RCL|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Crystal structure of REXO2-D199A-AA | X-ray diffraction | 1.97 | 2019-10-09 | |||
| 16 | 5JJU|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-ray diffraction | 2.31 | 2016-05-04 | |||
| 17 | 4EJT|1|G | 5'-R(*AP*A)-3' | Staphylococcus epidermidis TcaR in complex with RNA | X-ray diffraction | 3 | 2013-06-05 | ||||
| 18 | 3J0O|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | Electron microscopy | 9 | 2011-11-16 | |||
| 19 | 3J0L|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | Electron microscopy | 9.8 | 2011-11-16 | |||
| 20 | 3J0Q|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | Electron microscopy | 10.6 | 2011-11-16 | |||
| 21 | 3J0P|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | Electron microscopy | 10.6 | 2011-11-16 |
Release history
| Release | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_53003.1 | NR_all_80570.10 | 3.196 | (13) 3J0P|1|w, 6N6C|1|D, 6P7Q|1|E, 3J0O|1|w, 5JJU|1|C, 6P7Q|1|D, 6RCL|1|C, 4EJT|1|G, 6N6J|1|D, 3J0L|1|w, 3J0Q|1|w, 6N6J|1|C, 6P7Q|1|F | (8) 7MPM|1|F, 7MPM|1|D, 7MPM|1|B, 7MPM|1|P, 7MPM|1|N, 7MPM|1|L, 7MPM|1|J, 7MPM|1|H | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6N6C|1|D | Vibrio cholerae Oligoribonuclease bound to pAA | X-RAY DIFFRACTION | 1.62 | 2 |
| 2 | 6P7Q|1|E | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 3 | 6N6J|1|D | Human REXO2 bound to pAA | X-RAY DIFFRACTION | 1.32 | 3 |
| 4 | 7MPM|1|H | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 5 | 4EJT|1|G | Staphylococcus epidermidis TcaR in complex with RNA | X-RAY DIFFRACTION | 3 | 2 |
| 6 | 3J0L|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | ELECTRON MICROSCOPY | 9.8 | 2 |
| 7 | 3J0Q|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | ELECTRON MICROSCOPY | 10.6 | 2 |
| 8 | 3J0P|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | ELECTRON MICROSCOPY | 10.6 | 2 |
| 9 | 3J0O|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | ELECTRON MICROSCOPY | 9 | 2 |
| 10 | 7MPM|1|P | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 11 | 6N6J|1|C | Human REXO2 bound to pAA | X-RAY DIFFRACTION | 1.32 | 3 |
| 12 | 7MPM|1|N | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 13 | 5JJU|1|C | Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-RAY DIFFRACTION | 2.31 | 2 |
| 14 | 6P7Q|1|D | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 15 | 6RCL|1|C | Crystal structure of REXO2-D199A-AA | X-RAY DIFFRACTION | 1.97 | 2 |
| 16 | 7MPM|1|L | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 17 | 7MPM|1|F | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 18 | 7MPM|1|D | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 19 | 6P7Q|1|F | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 20 | 7MPM|1|B | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |
| 21 | 7MPM|1|J | Bartonella henselae NrnC bound to pAA | X-RAY DIFFRACTION | 1.95 | 3 |