Equivalence class NR_all_56092.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4DB2|1|I+ 4DB2|1|J (rep) | 5'-R(*GP*GP*GP*CP*GP*GP*GP*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-ray diffraction | 3.16 | 2012-08-29 | ||||
| 2 | 4DB2|1|E+ 4DB2|1|F | 5'-R(*GP*GP*GP*CP*GP*GP*GP*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-ray diffraction | 3.16 | 2012-08-29 | ||||
| 3 | 4DB2|1|H+ 4DB2|1|G | 5'-R(*GP*GP*GP*CP*GP*GP*GP*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-ray diffraction | 3.16 | 2012-08-29 | ||||
| 4 | 4DB4|1|C | 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-ray diffraction | 3.6 | 2012-08-29 | ||||
| 5 | 4DB4|1|D | 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-ray diffraction | 3.6 | 2012-08-29 | ||||
| 6 | 4DB4|1|E | 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-ray diffraction | 3.6 | 2012-08-29 | ||||
| 7 | 4DB4|1|F | 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3' | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-ray diffraction | 3.6 | 2012-08-29 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_56092.1 | NR_all_10136.1 | 2.124 | (3) 4DB2|1|H+4DB2|1|G, 4DB2|1|E+4DB2|1|F, 4DB2|1|I+4DB2|1|J | (4) 4DB4|1|E, 4DB4|1|D, 4DB4|1|C, 4DB4|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_56092.1 | NR_all_39555.1 | 2.132 | (3) 4DB2|1|I+4DB2|1|J, 4DB2|1|E+4DB2|1|F, 4DB2|1|H+4DB2|1|G | (4) 4DB4|1|D, 4DB4|1|E, 4DB4|1|F, 4DB4|1|C | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4DB4|1|F | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-RAY DIFFRACTION | 3.6 | 7 |
| 2 | 4DB4|1|E | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-RAY DIFFRACTION | 3.6 | 7 |
| 3 | 4DB4|1|D | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-RAY DIFFRACTION | 3.6 | 7 |
| 4 | 4DB4|1|C | Mss116p DEAD-box helicase domain 2 bound to a chimaeric RNA-DNA duplex | X-RAY DIFFRACTION | 3.6 | 7 |
| 5 | 4DB2|1|H+4DB2|1|G | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-RAY DIFFRACTION | 3.16 | 14 |
| 6 | 4DB2|1|I+4DB2|1|J | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-RAY DIFFRACTION | 3.16 | 14 |
| 7 | 4DB2|1|E+4DB2|1|F | Mss116p DEAD-box helicase domain 2 bound to an RNA duplex | X-RAY DIFFRACTION | 3.16 | 14 |