BGSU RNA Site //

Equivalence class NR_all_57839.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
13J92|1|5+ 3J92|1|8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.62015-01-21
24UJE|1|A2+ 4UJE|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16
34UJC|1|A2+ 4UJC|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30
44UJD|1|A2+ 4UJD|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30

Release history

Release2.72.82.92.102.112.12
Date2015-01-232015-01-302015-02-062015-02-132015-02-202015-02-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_57839.2NR_all_57839.12.7(3) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3(1) 3J92|1|5+3J92|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_57839.2NR_20.0_57839.32.13(4) 3J92|1|5+3J92|1|8, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3(0) (2) 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3
NR_all_57839.2NR_4.0_57839.32.13(1) 3J92|1|5+3J92|1|8(3) 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3(0)
NR_all_57839.2NR_all_57839.32.13(4) 4UJD|1|A2+4UJD|1|A3, 3J92|1|5+3J92|1|8, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3(0) (2) 4D67|1|2+4D67|1|3, 4D5Y|1|2+4D5Y|1|3

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14UJD|1|A2+4UJD|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.93616
24UJC|1|A2+4UJC|1|A3mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.53616
34UJE|1|A2+4UJE|1|A3Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.93616
43J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662