Equivalence class NR_all_57839.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J92|1|5+ 3J92|1|8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure and assembly pathway of the ribosome quality control complex | Electron microscopy | 3.6 | 2015-01-21 |
| 2 | 4UJE|1|A2+ 4UJE|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 3 | 4UJC|1|A2+ 4UJC|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 4 | 4UJD|1|A2+ 4UJD|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_57839.2 | NR_all_57839.1 | 2.7 | (3) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3 | (1) 3J92|1|5+3J92|1|8 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_57839.2 | NR_20.0_57839.3 | 2.13 | (4) 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3, 3J92|1|5+3J92|1|8, 4UJD|1|A2+4UJD|1|A3 | (0) | (2) 4D67|1|2+4D67|1|3, 4D5Y|1|2+4D5Y|1|3 |
| NR_all_57839.2 | NR_4.0_57839.3 | 2.13 | (1) 3J92|1|5+3J92|1|8 | (3) 4UJE|1|A2+4UJE|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3 | (0) |
| NR_all_57839.2 | NR_all_57839.3 | 2.13 | (4) 3J92|1|5+3J92|1|8, 4UJD|1|A2+4UJD|1|A3, 4UJC|1|A2+4UJC|1|A3, 4UJE|1|A2+4UJE|1|A3 | (0) | (2) 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJD|1|A2+4UJD|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 3616 |
| 2 | 4UJC|1|A2+4UJC|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 3616 |
| 3 | 4UJE|1|A2+4UJE|1|A3 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 3616 |
| 4 | 3J92|1|5+3J92|1|8 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 3662 |