BGSU RNA Site //

Equivalence class NR_all_60848.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17EZ2|1|N (rep)Group I catalytic intronHolo L-16 ScaI Tetrahymena ribozyme S1, Holo L-16 ScaI Tetrahymena ribozyme S2, Holo L-16 ScaI Tetrahymena ribozymeTetrahymena thermophilaEukaryaRF00028Holo L-16 ScaI Tetrahymena ribozymeElectron microscopy3.052021-08-25
27XSN|1|NGroup I catalytic intronRNA (387-MER)Tetrahymena thermophilaEukaryaRF00028Native Tetrahymena ribozyme conformationElectron microscopy3.012022-08-03
37EZ0|1|NGroup I catalytic intronApo L-21 ScaI Tetrahymena ribozymeTetrahymena thermophilaEukaryaRF00028Apo L-21 ScaI Tetrahymena ribozymeElectron microscopy3.142021-08-25
47R6L|1|AGroup I catalytic intronGroup I intron, 5 prime fragment, Group I intron, 3 prime fragment plus 3 prime exonTetrahymena thermophilaEukaryaRF000285 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructElectron microscopy2.852022-05-04
57XSK|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 1Electron microscopy3.532022-08-03
67R6M|1|AGroup I catalytic intronGroup I intron, Ligated exon mimic of the Group I intronTetrahymena thermophilaEukaryaRF00028Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructElectron microscopy3.682022-05-04
77XSL|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 2Electron microscopy3.842022-08-03
87XSM|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 3Electron microscopy4.012022-08-03
97R6N|1|AGroup I catalytic intronGroup I intronTetrahymena thermophilaEukaryaRF00028Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric constructElectron microscopy4.12022-05-04
106WLS|11|AGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Tetrahymena ribozyme models, 6.8 Angstrom resolutionElectron microscopy6.82020-07-08

Release history

Release3.2423.2433.2443.245
Date2022-08-032022-08-102022-08-172022-08-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_60848.1NR_all_60074.13.242(6) 7EZ2|1|N, 7EZ0|1|N, 6WLS|11|A, 7R6N|1|A, 7R6M|1|A, 7R6L|1|A(4) 7XSM|1|N, 7XSL|1|N, 7XSK|1|N, 7XSN|1|N(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_60848.1NR_all_60848.23.246(10) 7R6L|1|A, 7EZ2|1|N, 7EZ0|1|N, 6WLS|11|A, 7XSN|1|N, 7XSM|1|N, 7XSL|1|N, 7XSK|1|N, 7R6N|1|A, 7R6M|1|A(0) (1) 7UVT|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17R6L|1|A5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructELECTRON MICROSCOPY2.85343
27R6M|1|APost-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructELECTRON MICROSCOPY3.68356
37EZ2|1|NHolo L-16 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.05392
47R6N|1|AExon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric constructELECTRON MICROSCOPY4.1354
57XSN|1|NNative Tetrahymena ribozyme conformationELECTRON MICROSCOPY3.01387
67EZ0|1|NApo L-21 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.14387
76WLS|11|ATetrahymena ribozyme models, 6.8 Angstrom resolutionELECTRON MICROSCOPY6.8388
87XSL|1|NMisfolded Tetrahymena ribozyme conformation 2ELECTRON MICROSCOPY3.84388
97XSK|1|NMisfolded Tetrahymena ribozyme conformation 1ELECTRON MICROSCOPY3.53388
107XSM|1|NMisfolded Tetrahymena ribozyme conformation 3ELECTRON MICROSCOPY4.01388