Equivalence class NR_all_63911.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3SYW|1|A+ 3SYW|1|B (rep) | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-ray diffraction | 1.57 | 2012-04-25 | ||||
| 2 | 3SJ2|1|A+ 3SJ2|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3') | A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-ray diffraction | 1.36 | 2011-08-03 | ||||
| 3 | 4J50|1|A+ 4J50|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Crystal Structure of an Expanded RNA CAG Repeat | X-ray diffraction | 1.65 | 2013-02-20 | |||
| 4 | 4YN6|1|A+ 4YN6|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-ray diffraction | 2.3 | 2015-04-22 | |||
| 5 | 3SZX|1|A+ 3SZX|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-ray diffraction | 2.2 | 2012-04-25 |
Release history
| Release | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_63911.2 | NR_all_63911.1 | 2.20 | (4) 3SJ2|1|A+3SJ2|1|B, 3SYW|1|A+3SYW|1|B, 3SZX|1|A+3SZX|1|B, 4J50|1|A+4J50|1|B | (1) 4YN6|1|A+4YN6|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_63911.2 | NR_all_45159.1 | 2.93 | (3) 3SYW|1|A+3SYW|1|B, 4J50|1|A+4J50|1|B, 4YN6|1|A+4YN6|1|B | (2) 3SJ2|1|A+3SJ2|1|B, 3SZX|1|A+3SZX|1|B | (0) |
| NR_all_63911.2 | NR_all_62516.1 | 2.93 | (1) 3SJ2|1|A+3SJ2|1|B | (4) 3SYW|1|A+3SYW|1|B, 3SZX|1|A+3SZX|1|B, 4J50|1|A+4J50|1|B, 4YN6|1|A+4YN6|1|B | (0) |
| NR_all_63911.2 | NR_all_86744.1 | 2.93 | (1) 3SZX|1|A+3SZX|1|B | (4) 3SJ2|1|A+3SJ2|1|B, 3SYW|1|A+3SYW|1|B, 4J50|1|A+4J50|1|B, 4YN6|1|A+4YN6|1|B | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3SYW|1|A+3SYW|1|B | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 1.57 | 21 |
| 2 | 4YN6|1|A+4YN6|1|B | Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-RAY DIFFRACTION | 2.3 | 19 |
| 3 | 4J50|1|A+4J50|1|B | Crystal Structure of an Expanded RNA CAG Repeat | X-RAY DIFFRACTION | 1.65 | 19 |
| 4 | 3SJ2|1|A+3SJ2|1|B | A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-RAY DIFFRACTION | 1.36 | 19 |
| 5 | 3SZX|1|A+3SZX|1|B | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 2.2 | 19 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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