#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17SOS|1|B (rep)RNA (5'-R(*AP*AP*AP*A)-3')synthetic constructSyntheticLaM domain of human LARP1 in complex with AAAA RNAX-ray diffraction1.252022-08-03
26SCE|1|Bcyclic oligoadenylatesynthetic constructSyntheticStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-ray diffraction1.832020-02-19
36XL1|1|CcA4synthetic constructSyntheticcrystal structure of cA4-activated Cad1(D294N)X-ray diffraction1.952020-12-30
46SCF|1|Icyclic oligoadenylatesynthetic constructSyntheticA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
56SCF|1|Kcyclic oligoadenylatesynthetic constructSyntheticA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
66YUD|1|Kcyclic tetra-adenylate (cA4)synthetic constructSyntheticStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
76YUD|1|Ocyclic tetra-adenylate (cA4)synthetic constructSyntheticStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
86SCF|1|Mcyclic oligoadenylatesynthetic constructSyntheticA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
96YUD|1|Pcyclic tetra-adenylate (cA4)synthetic constructSyntheticStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
106SCF|1|Lcyclic oligoadenylatesynthetic constructSyntheticA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
116YUD|1|Mcyclic tetra-adenylate (cA4)synthetic constructSyntheticStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
126YUD|1|Qcyclic tetra-adenylate (cA4)synthetic constructSyntheticStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
136WXQ|1|Ecyclic tetraadenylatesynthetic constructSyntheticCrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-ray diffraction2.052021-11-17
148BAO|1|CCyclic tetra-adenylate (cA4)synthetic constructSyntheticDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-ray diffraction2.062022-11-30
156W11|1|CcA4Saccharolobus solfataricusArchaeaThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-ray diffraction2.462021-03-10
166O6X|1|DCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
174BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeaArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-ray diffraction2.52012-10-03
187BDV|1|Fcyclic tetra-adenylatesynthetic constructSyntheticStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.022021-03-03
198B0R|1|DRNA (5'-R(P*AP*AP*AP*A)-3')SulfurihydrogenibiumStructure of the CalpL/cA4 complexX-ray diffraction2.22022-11-16
207BDV|1|Hcyclic tetra-adenylatesynthetic constructSyntheticStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.022021-03-03
216O6X|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
227DID|1|CRNA (5'-R(*AP*AP*AP*A)-3')Mycoplasma genitalium G37BacteriaMycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-ray diffraction1.92021-03-17
236O7B|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
246O6V|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
256WXX|1|YcA4synthetic constructSyntheticcrystal structure of cA4-activated Cad1X-ray diffraction32020-12-30
266WXX|1|XcA4synthetic constructSyntheticcrystal structure of cA4-activated Cad1X-ray diffraction32020-12-30
276R7B|1|DRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
286R9R|1|DDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
296OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
307YGH|1|CRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)X-ray diffraction3.112023-02-15
317YGL|1|CRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-ray diffraction2.52023-02-15
326OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
336OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
346O6V|1|DCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
356OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
366O7B|1|DCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
375E02|1|CRNA (5'-R(*AP*AP*AP*A)-3')synthetic constructSyntheticStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-ray diffraction3.82016-07-06
386R9R|1|EDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
396R7B|1|ERNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
407Z55|1|CCCCyclic RNA cA4synthetic constructSyntheticCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-ray diffraction1.6642022-11-23
416O7I|1|IRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructSyntheticCryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy3.22019-07-31
426O7H|1|KCyclic DNA cA4synthetic constructSyntheticCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy2.92019-07-31

Release history

Release3.2703.2713.2723.2733.2743.2753.2763.277
Date2023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-05

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17YGL|1|CCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-RAY DIFFRACTION2.53
27YGH|1|CCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)X-RAY DIFFRACTION3.114
37SOS|1|BLaM domain of human LARP1 in complex with AAAA RNAX-RAY DIFFRACTION1.254
46O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
56O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
67BDV|1|HStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
76WXX|1|Xcrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
86WXX|1|Ycrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
96XL1|1|Ccrystal structure of cA4-activated Cad1(D294N)X-RAY DIFFRACTION1.954
107Z55|1|CCCCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-RAY DIFFRACTION1.6644
116W11|1|CThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-RAY DIFFRACTION2.464
126SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
136SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
146SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
156O7I|1|ICryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY3.24
166O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
176O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
186R7B|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.124
196R9R|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.74
206O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
216O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
226YUD|1|KStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
236YUD|1|PStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
246YUD|1|OStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
256YUD|1|QStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
266YUD|1|MStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
276SCE|1|BStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.834
286SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
296WXQ|1|ECrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-RAY DIFFRACTION2.054
308B0R|1|DStructure of the CalpL/cA4 complexX-RAY DIFFRACTION2.24
318BAO|1|CDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-RAY DIFFRACTION2.064
327BDV|1|FStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
336OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
346OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
356O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
364BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
375E02|1|CStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-RAY DIFFRACTION3.84
387DID|1|CMycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-RAY DIFFRACTION1.93
396OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
406R7B|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.122
416OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
426R9R|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72