#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6F|1|D (rep)RNA (5'-R(P*GP*C)-3')synthetic constructVibrio cholerae Oligoribonuclease bound to pGCX-RAY DIFFRACTION1.742019-06-12
27MPN|1|B5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
37MPN|1|N5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
47MPN|1|J5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
54OHY|1|BRNA (5'-R(*GP*C)-3')C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-RAY DIFFRACTION22014-05-14
67MPN|1|P5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
77MPN|1|H5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
87MPN|1|L5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
97MPN|1|D5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
107MPN|1|F5'-phosphorylated GCBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942021-09-15
114OI1|1|BRNA (5'-R(*GP*C)-3')Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-RAY DIFFRACTION2.32014-05-14
124OI0|1|BRNA (5'-R(*GP*C)-3')bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-RAY DIFFRACTION2.22014-05-14

Release history

Release3.196
Date2021-09-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_65789.1NR_all_50478.53.196(4) 4OI1|1|B, 4OI0|1|B, 4OHY|1|B, 6N6F|1|D(8) 7MPN|1|F, 7MPN|1|D, 7MPN|1|B, 7MPN|1|P, 7MPN|1|N, 7MPN|1|L, 7MPN|1|J, 7MPN|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14OI0|1|Bbound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-RAY DIFFRACTION2.22
24OI1|1|BClp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-RAY DIFFRACTION2.32
34OHY|1|BC. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-RAY DIFFRACTION22
47MPN|1|PBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
57MPN|1|DBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
67MPN|1|JBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
77MPN|1|FBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
86N6F|1|DVibrio cholerae Oligoribonuclease bound to pGCX-RAY DIFFRACTION1.743
97MPN|1|LBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
107MPN|1|HBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
117MPN|1|NBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942
127MPN|1|BBartonella henselae NrnC bound to pGCX-RAY DIFFRACTION1.942