Equivalence class NR_all_68467.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5LZS|1|2 (rep) | Transfer RNA | tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 2 | 5LZS|1|ii | Transfer RNA | tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 3 | 5LZV|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 4 | 6GZ5|1|Bv | Transfer RNA | P/P-site-tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 2018-12-05 |
| 5 | 5LZZ|1|2 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 6 | 5LZW|1|2 | Transfer RNA | P-site tRNA, mRNA (truncated) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 2016-11-30 |
| 7 | 6GZ4|1|Bv | Transfer RNA | ap/P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 2018-12-05 |
| 8 | 6GZ3|1|Bv | Transfer RNA | ap/P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 2018-12-05 |
| 9 | 6MTB|1|2 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 2018-11-21 |
| 10 | 5LZX|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 2016-11-30 |
| 11 | 5LZT|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 2016-11-30 |
| 12 | 6FRK|1|2 | Transfer RNA | tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron microscopy | 3.7 | 2018-03-28 |
| 13 | 3JAH|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
| 14 | 6HCF|1|23 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 2018-10-17 |
| 15 | 3JAG|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 16 | 3JAI|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 17 | 6FTI|1|q | Transfer RNA | p-Site tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | Electron microscopy | 4.2 | 2018-03-21 |
| 18 | 5LZU|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 2016-11-30 |
| 19 | 6HCM|1|23 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit collided di-ribosome (stalled monosome) | Electron microscopy | 6.8 | 2018-10-17 |
| 20 | 3JAJ|1|3 | Transfer RNA | Val tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 21 | 3JAN|1|3 | Transfer RNA | Val tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
Release history
| Release | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_68467.6 | NR_all_68467.5 | 3.51 | (18) 3JAG|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 6MTB|1|2, 5LZS|1|ii, 6HCM|1|23, 5LZS|1|2, 6HCF|1|23, 3JAN|1|3, 6FTI|1|q, 3JAJ|1|3, 6FRK|1|2, 3JAI|1|2, 5LZZ|1|2, 3JAH|1|2, 5LZX|1|2 | (3) 6GZ3|1|Bv, 6GZ5|1|Bv, 6GZ4|1|Bv | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_68467.6 | NR_all_68467.7 | 3.99 | (20) 5LZX|1|2, 3JAJ|1|3, 6MTB|1|2, 6FRK|1|2, 5LZS|1|2, 6GZ3|1|Bv, 5LZU|1|2, 3JAG|1|2, 6GZ5|1|Bv, 5LZW|1|2, 3JAI|1|2, 6HCM|1|23, 5LZZ|1|2, 3JAN|1|3, 6FTI|1|q, 5LZT|1|2, 6GZ4|1|Bv, 5LZV|1|2, 3JAH|1|2, 6HCF|1|23 | (1) 5LZS|1|ii | (0) |
| NR_all_68467.6 | NR_all_86891.1 | 3.99 | (1) 5LZS|1|ii | (20) 5LZT|1|2, 6GZ4|1|Bv, 5LZV|1|2, 3JAH|1|2, 6HCF|1|23, 5LZX|1|2, 3JAJ|1|3, 6MTB|1|2, 6FRK|1|2, 5LZS|1|2, 6GZ3|1|Bv, 5LZU|1|2, 3JAG|1|2, 6GZ5|1|Bv, 5LZW|1|2, 3JAI|1|2, 6HCM|1|23, 5LZZ|1|2, 3JAN|1|3, 6FTI|1|q | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5LZS|1|ii | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 76 |
| 2 | 5LZU|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 76 |
| 3 | 5LZS|1|2 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 76 |
| 4 | 6MTB|1|2 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 76 |
| 5 | 5LZZ|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 76 |
| 6 | 5LZX|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 76 |
| 7 | 5LZW|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 76 |
| 8 | 5LZT|1|2 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 76 |
| 9 | 5LZV|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 76 |
| 10 | 3JAH|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 76 |
| 11 | 6FTI|1|q | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 76 |
| 12 | 3JAG|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
| 13 | 3JAI|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
| 14 | 6HCM|1|23 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 76 |
| 15 | 6HCF|1|23 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 76 |
| 16 | 3JAN|1|3 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
| 17 | 3JAJ|1|3 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
| 18 | 6FRK|1|2 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 76 |
| 19 | 6GZ5|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 76 |
| 20 | 6GZ3|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 76 |
| 21 | 6GZ4|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 76 |