Equivalence class NR_all_73286.10 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QW6|1|5 (rep) | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | Electron microscopy | 2.92 | 2019-04-17 |
| 2 | 6QX9|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
| 3 | 6QDV|1|5 | U5 spliceosomal RNA | U5 snRNA, Ligated exons: MINX mRNA | Homo sapiens | Eukarya | RF00020 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 4 | 6ICZ|1|B | U5 spliceosomal RNA | U5snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 5 | 6FF4|1|5 | U5 spliceosomal RNA | U5 snRNA, U2 snRNA, pre mRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 3.4 | 2018-08-29 |
| 6 | 6ID0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | Electron microscopy | 2.9 | 2019-03-13 |
| 7 | 5XJC|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 8 | 6ID1|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 9 | 5YZG|1|B | U5 spliceosomal RNA | U5 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 10 | 6AHD|1|B | U5 spliceosomal RNA | U5snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | Electron microscopy | 3.8 | 2018-11-14 |
| 11 | 5O9Z|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | Electron microscopy | 4.5 | 2017-08-16 |
| 12 | 6FF7|1|5 | U5 spliceosomal RNA | U5 snRNA, U2 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 4.5 | 2019-03-13 |
| 13 | 5Z58|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 14 | 5Z56|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 15 | 6AH0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | Electron microscopy | 5.7 | 2018-11-14 |
| 16 | 5MQF|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 17 | 5Z57|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
| 18 | 3JCR|1|H | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | Electron microscopy | 7 | 2016-03-09 |
Release history
| Release | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_73286.10 | NR_all_73286.9 | 3.70 | (16) 5Z57|1|B, 5Z56|1|B, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 3JCR|1|H, 6QDV|1|5, 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF7|1|5, 6FF4|1|5, 6AHD|1|B, 6AH0|1|B, 5Z58|1|B | (2) 6QW6|1|5, 6QX9|1|5 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_73286.10 | NR_all_73286.11 | 3.148 | (18) 5XJC|1|B, 6FF7|1|5, 5O9Z|1|5, 6FF4|1|5, 6AHD|1|B, 6QX9|1|5, 5MQF|1|5, 6AH0|1|B, 6QW6|1|5, 3JCR|1|H, 5Z58|1|B, 6QDV|1|5, 5Z57|1|B, 6ID1|1|B, 5Z56|1|B, 6ID0|1|B, 5YZG|1|B, 6ICZ|1|B | (0) | (2) 7A5P|1|5, 6ZYM|1|5 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 |
| 2 | 5YZG|1|B | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 84 |
| 3 | 5Z56|1|B | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 84 |
| 4 | 5Z57|1|B | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 84 |
| 5 | 5Z58|1|B | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 84 |
| 6 | 6FF7|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 4.5 | 70 |
| 7 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 |
| 8 | 6QDV|1|5 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 75 |
| 9 | 6QX9|1|5 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 104 |
| 10 | 6QW6|1|5 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 104 |
| 11 | 6AHD|1|B | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 115 |
| 12 | 6AH0|1|B | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 115 |
| 13 | 5O9Z|1|5 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 114 |
| 14 | 5MQF|1|5 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 114 |
| 15 | 6ID0|1|B | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 98 |
| 16 | 6ID1|1|B | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 98 |
| 17 | 6ICZ|1|B | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 97 |
| 18 | 3JCR|1|H | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 63 |