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Equivalence class NR_all_73827.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction12014-11-19
2480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.51999-10-08
34Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliBacteriaE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-ray diffraction12015-11-18
43DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.972009-03-24
51MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.412003-02-25
63DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction12009-03-24
73DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction12009-03-24
83S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.12012-04-11
94NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coliBacteria2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.162014-12-10
103S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliBacteriaCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.22012-04-11
111Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.042003-11-25
12483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.111999-10-08
133DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.962009-03-24
144NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.012014-11-19
153DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction12009-03-24

Release history

Release2.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.70
Date2015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_73827.3NR_all_73827.22.50(14) 1MSY|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A(1) 4Y27|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_73827.3NR_1.5_73827.42.71(15) 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4Y27|1|A, 4NXH|1|A, 4NMG|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_2.0_73827.42.71(15) 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4Y27|1|A, 4NXH|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_2.5_73827.42.71(15) 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4Y27|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_20.0_73827.42.71(15) 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_3.0_73827.42.71(15) 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_3.5_73827.42.71(15) 1MSY|1|A, 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A, 1Q9A|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_4.0_73827.42.71(15) 1Q9A|1|A, 1MSY|1|A, 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A, 3DVZ|1|A(0) (1) 5D99|1|A
NR_all_73827.3NR_all_73827.42.71(15) 3DVZ|1|A, 1Q9A|1|A, 1MSY|1|A, 4Y27|1|A, 4NXH|1|A, 4NMG|1|A, 4NLF|1|A, 483D|1|A, 480D|1|A, 3S8U|1|A, 3S7C|1|A, 3DW7|1|A, 3DW6|1|A, 3DW5|1|A, 3DW4|1|A(0) (1) 5D99|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
2480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
34Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
43DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
53DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
63S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
74NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
83DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
94NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
103DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
113DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
123S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
131Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
14483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
151MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
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