Equivalence class NR_all_74023.8 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 6S0X|1|a (rep) | 16S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2019-08-21 |
2 | 5NGM|1|Aa | 16S ribosomal RNA | Staphylococcus aureus | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2017-10-04 |
3 | 7ASP|1|X | 16S rRNA | Staphylococcus aureus | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 2021-11-17 |
4 | 7NHL|1|a | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
5 | 7NHM|1|a | 16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
6 | 6YEF|1|a | 16S rRNA, mRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2021-01-27 |
7 | 7ASO|1|X | 16S | Staphylococcus aureus | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 2021-11-17 |
8 | 6S13|1|a | 16S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 2019-08-21 |
9 | 5ND8|1|a | 16S ribosomal RNA | Staphylococcus aureus | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
10 | 5ND9|1|a | 16S ribosomal RNA | Staphylococcus aureus | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
11 | 7KWG|1|a | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | ELECTRON MICROSCOPY | 3.75 | 2021-01-27 |
12 | 5LI0|1|a | 16S ribosomal RNA | Staphylococcus aureus | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2016-12-28 |
13 | 5T7V|1|A | 16S ribosomal RNA | Staphylococcus aureus | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2017-05-31 |
14 | 7BGD|1|a | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | ELECTRON MICROSCOPY | 3.2 | 2021-12-08 |
15 | 5TCU|1|A | 16S RRNA | Staphylococcus aureus | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2017-05-24 |
16 | 7BGE|1|a | 16S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | ELECTRON MICROSCOPY | 3.6 | 2021-12-08 |
17 | 6FXC|1|Ba | 16S ribosomal RNA | Staphylococcus aureus | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2018-03-21 |
18 | 6FXC|1|Aa | 16S ribosomal RNA | Staphylococcus aureus | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2018-03-21 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_74023.8 | NR_all_74023.7 | 3.208 | (16) 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a, 7NHM|1|a, 7NHL|1|a, 7KWG|1|a, 7ASP|1|X, 7ASO|1|X, 6YEF|1|a, 6S13|1|a | (2) 7BGD|1|a, 7BGE|1|a | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_74023.8 | NR_all_74023.9 | 3.216 | (18) 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 7NHM|1|a, 5LI0|1|a, 7NHL|1|a, 7KWG|1|a, 7BGE|1|a, 7BGD|1|a, 7ASP|1|X, 7ASO|1|X, 6YEF|1|a, 6S13|1|a | (0) | (1) 7P48|1|a |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 7BGE|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only) | ELECTRON MICROSCOPY | 3.6 | 465 |
2 | 5TCU|1|A | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 1464 |
3 | 6YEF|1|a | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 1540 |
4 | 5ND8|1|a | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 1542 |
5 | 5LI0|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 1547 |
6 | 7NHM|1|a | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1531 |
7 | 7NHL|1|a | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 1538 |
8 | 7KWG|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine | ELECTRON MICROSCOPY | 3.75 | 1552 |
9 | 7BGD|1|a | Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only) | ELECTRON MICROSCOPY | 3.2 | 1096 |
10 | 5ND9|1|a | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 1541 |
11 | 5NGM|1|Aa | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 1539 |
12 | 6FXC|1|Ba | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 |
13 | 6FXC|1|Aa | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 1539 |
14 | 6S0X|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 1539 |
15 | 6S13|1|a | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 1539 |
16 | 5T7V|1|A | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 1419 |
17 | 7ASO|1|X | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 1415 |
18 | 7ASP|1|X | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 1447 |