BGSU RNA Site //

Equivalence class NR_all_74023.8 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16S0X|1|a (rep)16S ribosomal RNAStaphylococcus aureusErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.422019-08-21
25NGM|1|Aa16S ribosomal RNAStaphylococcus aureus2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92017-10-04
37ASP|1|X16S rRNAStaphylococcus aureusStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.862021-11-17
47NHL|1|a16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12021-05-05
57NHM|1|a16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 832570S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12021-05-05
66YEF|1|a16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 832570S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.22021-01-27
77ASO|1|X16SStaphylococcus aureusStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.112021-11-17
86S13|1|a16S ribosomal RNAStaphylococcus aureusErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.582019-08-21
95ND8|1|a16S ribosomal RNAStaphylococcus aureusHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72017-06-28
105ND9|1|a16S ribosomal RNAStaphylococcus aureusHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72017-06-28
117KWG|1|a16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325Staphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.752021-01-27
125LI0|1|a16S ribosomal RNAStaphylococcus aureus70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82016-12-28
135T7V|1|A16S ribosomal RNAStaphylococcus aureusMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62017-05-31
147BGD|1|a16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)ELECTRON MICROSCOPY3.22021-12-08
155TCU|1|A16S RRNAStaphylococcus aureusMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92017-05-24
167BGE|1|a16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)ELECTRON MICROSCOPY3.62021-12-08
176FXC|1|Ba16S ribosomal RNAStaphylococcus aureusThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762018-03-21
186FXC|1|Aa16S ribosomal RNAStaphylococcus aureusThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762018-03-21

Release history

Release3.2083.2093.2103.2113.2123.2133.2143.215
Date2021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_74023.8NR_all_74023.73.208(16) 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a, 7NHM|1|a, 7NHL|1|a, 7KWG|1|a, 7ASP|1|X, 7ASO|1|X, 6YEF|1|a, 6S13|1|a(2) 7BGD|1|a, 7BGE|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_74023.8NR_all_74023.93.216(18) 6S0X|1|a, 6FXC|1|Ba, 6FXC|1|Aa, 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 7NHM|1|a, 5LI0|1|a, 7NHL|1|a, 7KWG|1|a, 7BGE|1|a, 7BGD|1|a, 7ASP|1|X, 7ASO|1|X, 6YEF|1|a, 6S13|1|a(0) (1) 7P48|1|a

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17BGE|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)ELECTRON MICROSCOPY3.6465
25TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
36YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21540
45ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
55LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
67NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
77NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
87KWG|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.751552
97BGD|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)ELECTRON MICROSCOPY3.21096
105ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
115NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
126FXC|1|BaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
136FXC|1|AaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
146S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
156S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
165T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419
177ASO|1|XStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.111415
187ASP|1|XStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.861447