Equivalence class NR_all_74955.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1X8W|1|B (rep) | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 2 | 1X8W|1|A | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 3 | 1X8W|1|D | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 4 | 1X8W|1|C | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_74955.1 | NR_20.0_39627.1 | 2.1 | (4) 1X8W|1|A, 1X8W|1|B, 1X8W|1|C, 1X8W|1|D | (0) | (9) 1GID|1|A, 1HR2|1|A, 2R8S|1|R, 1GRZ|1|B, 1L8V|1|B, 1GRZ|1|A, 1L8V|1|A, 1GID|1|B, 1HR2|1|B |
| NR_all_74955.1 | NR_4.0_39627.1 | 2.1 | (4) 1X8W|1|C, 1X8W|1|D, 1X8W|1|A, 1X8W|1|B | (0) | (7) 1HR2|1|A, 2R8S|1|R, 1HR2|1|B, 1GID|1|A, 1L8V|1|A, 1GID|1|B, 1L8V|1|B |
| NR_all_74955.1 | NR_all_39627.1 | 2.1 | (4) 1X8W|1|A, 1X8W|1|B, 1X8W|1|C, 1X8W|1|D | (0) | (9) 1GID|1|A, 1HR2|1|A, 2R8S|1|R, 1GRZ|1|B, 1L8V|1|B, 1GRZ|1|A, 1L8V|1|A, 1GID|1|B, 1HR2|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1X8W|1|A | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 |
| 2 | 1X8W|1|B | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 247 |
| 3 | 1X8W|1|D | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 |
| 4 | 1X8W|1|C | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 237 |