Equivalence class NR_all_93855.12 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QI4|1|AA (rep) | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 2022-07-13 |
| 2 | 7P2E|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin | Electron microscopy | 2.4 | 2022-07-27 |
| 3 | 6ZM6|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 |
| 4 | 7PNX|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a | Electron microscopy | 2.76 | 2022-06-15 |
| 5 | 8CSS|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State D) | Electron microscopy | 2.36 | 2022-12-14 |
| 6 | 6ZM5|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 |
| 7 | 6VMI|1|AA | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 |
| 8 | 7PO3|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome small subunit | Electron microscopy | 2.92 | 2022-06-15 |
| 9 | 7PO1|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Initiation complex of human mitochondrial ribosome small subunit with IF3 | Electron microscopy | 2.92 | 2022-06-15 |
| 10 | 7PO0|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3 | Electron microscopy | 2.9 | 2022-06-15 |
| 11 | 6VLZ|1|AA | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 |
| 12 | 6RW4|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | Electron microscopy | 2.97 | 2020-06-03 |
| 13 | 8CSR|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State C) | Electron microscopy | 2.54 | 2022-12-14 |
| 14 | 7PO2|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | Electron microscopy | 3.09 | 2022-06-15 |
| 15 | 7PNY|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b | Electron microscopy | 3.06 | 2022-06-15 |
| 16 | 7PNZ|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c | Electron microscopy | 3.09 | 2022-06-15 |
| 17 | 6RW5|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | Electron microscopy | 3.14 | 2020-06-03 |
| 18 | 8CST|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State E) | Electron microscopy | 2.85 | 2022-12-14 |
| 19 | 8CSQ|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State B) | Electron microscopy | 2.54 | 2022-12-14 |
| 20 | 8CSU|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State C*) | Electron microscopy | 3.03 | 2022-12-14 |
| 21 | 7L08|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 2021-05-12 |
| 22 | 8CSP|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial small subunit assembly intermediate (State A) | Electron microscopy | 2.66 | 2022-12-14 |
| 23 | 7A5I|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | Electron microscopy | 3.7 | 2020-12-23 |
| 24 | 7A5K|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 2020-12-23 |
| 25 | 6ZSC|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 |
| 26 | 6ZSD|1|AA | Small subunit ribosomal RNA | 12SrRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | Electron microscopy | 3.7 | 2020-09-16 |
| 27 | 3J9M|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
| 28 | 7OG4|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with P/E-tRNA | Electron microscopy | 3.8 | 2021-06-23 |
| 29 | 6ZSA|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | Electron microscopy | 4 | 2020-10-21 |
| 30 | 6ZSG|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | Electron microscopy | 4 | 2020-10-14 |
| 31 | 6ZS9|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with ribosome recycling factor | Electron microscopy | 4 | 2020-10-14 |
| 32 | 7A5G|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | Electron microscopy | 4.33 | 2020-12-23 |
| 33 | 6NU2|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 3.9 | 2019-04-17 |
| 34 | 7A5F|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | Electron microscopy | 4.4 | 2020-12-23 |
| 35 | 6ZSB|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | Electron microscopy | 4.5 | 2020-09-16 |
| 36 | 6NU3|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 4.4 | 2019-04-17 |
| 37 | 6ZSE|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | Electron microscopy | 5 | 2020-09-16 |
Release history
| Release | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_93855.12 | NR_all_93855.11 | 3.261 | (31) 6ZSG|1|AA, 6RW5|1|A, 7L08|1|AA, 6ZSA|1|AA, 7PO0|1|A, 6ZS9|1|AA, 7PNZ|1|A, 6ZSE|1|AA, 7QI4|1|AA, 6RW4|1|A, 7A5K|1|A6, 6ZM6|1|AA, 7PNY|1|A, 6ZSD|1|AA, 7PO3|1|A, 6NU3|1|AA, 7A5I|1|A6, 6ZM5|1|AA, 7PNX|1|A, 6ZSC|1|AA, 7PO2|1|A, 6NU2|1|AA, 7A5G|1|A6, 6VMI|1|AA, 7P2E|1|A, 6ZSB|1|AA, 7PO1|1|A, 3J9M|1|AA, 7A5F|1|A6, 6VLZ|1|AA, 7OG4|1|AA | (6) 8CSR|1|A, 8CST|1|A, 8CSP|1|A, 8CSQ|1|A, 8CSS|1|A, 8CSU|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_93855.12 | NR_all_93855.13 | 3.283 | (37) 6ZM5|1|AA, 7PNX|1|A, 6VMI|1|AA, 7P2E|1|A, 6VLZ|1|AA, 7OG4|1|AA, 8CSU|1|A, 6RW5|1|A, 7L08|1|AA, 8CST|1|A, 6RW4|1|A, 7A5K|1|A6, 8CSS|1|A, 6NU3|1|AA, 7A5I|1|A6, 8CSR|1|A, 6NU2|1|AA, 7A5G|1|A6, 8CSQ|1|A, 3J9M|1|AA, 7A5F|1|A6, 8CSP|1|A, 6ZSG|1|AA, 7QI4|1|AA, 6ZSE|1|AA, 6ZSD|1|AA, 7PO3|1|A, 6ZSC|1|AA, 7PO2|1|A, 6ZSB|1|AA, 7PO1|1|A, 6ZSA|1|AA, 7PO0|1|A, 6ZS9|1|AA, 7PNZ|1|A, 6ZM6|1|AA, 7PNY|1|A | (0) | (1) 7QI6|1|AA |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7PNY|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b | ELECTRON MICROSCOPY | 3.06 | 946 |
| 2 | 6NU3|1|AA | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 4.4 | 923 |
| 3 | 6NU2|1|AA | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 923 |
| 4 | 6VLZ|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 944 |
| 5 | 6VMI|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 944 |
| 6 | 7L08|1|AA | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 944 |
| 7 | 7A5K|1|A6 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 928 |
| 8 | 3J9M|1|AA | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 923 |
| 9 | 7A5F|1|A6 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 928 |
| 10 | 7A5G|1|A6 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 928 |
| 11 | 7A5I|1|A6 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 928 |
| 12 | 6ZSE|1|AA | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 927 |
| 13 | 6ZS9|1|AA | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 927 |
| 14 | 6ZSC|1|AA | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 927 |
| 15 | 7OG4|1|AA | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 924 |
| 16 | 6ZSB|1|AA | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 927 |
| 17 | 6ZSD|1|AA | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 927 |
| 18 | 6ZSA|1|AA | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 927 |
| 19 | 6ZSG|1|AA | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 927 |
| 20 | 7QI4|1|AA | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 949 |
| 21 | 6ZM5|1|AA | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 954 |
| 22 | 6ZM6|1|AA | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 954 |
| 23 | 7PO2|1|A | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | ELECTRON MICROSCOPY | 3.09 | 950 |
| 24 | 7PO3|1|A | Human mitochondrial ribosome small subunit | ELECTRON MICROSCOPY | 2.92 | 950 |
| 25 | 7PO1|1|A | Initiation complex of human mitochondrial ribosome small subunit with IF3 | ELECTRON MICROSCOPY | 2.92 | 950 |
| 26 | 6RW5|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | ELECTRON MICROSCOPY | 3.14 | 950 |
| 27 | 6RW4|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | ELECTRON MICROSCOPY | 2.97 | 950 |
| 28 | 7P2E|1|A | Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin | ELECTRON MICROSCOPY | 2.4 | 959 |
| 29 | 7PNZ|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c | ELECTRON MICROSCOPY | 3.09 | 946 |
| 30 | 7PO0|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3 | ELECTRON MICROSCOPY | 2.9 | 946 |
| 31 | 7PNX|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a | ELECTRON MICROSCOPY | 2.76 | 946 |
| 32 | 8CST|1|A | Human mitochondrial small subunit assembly intermediate (State E) | ELECTRON MICROSCOPY | 2.85 | 886 |
| 33 | 8CSS|1|A | Human mitochondrial small subunit assembly intermediate (State D) | ELECTRON MICROSCOPY | 2.36 | 844 |
| 34 | 8CSR|1|A | Human mitochondrial small subunit assembly intermediate (State C) | ELECTRON MICROSCOPY | 2.54 | 853 |
| 35 | 8CSU|1|A | Human mitochondrial small subunit assembly intermediate (State C*) | ELECTRON MICROSCOPY | 3.03 | 881 |
| 36 | 8CSQ|1|A | Human mitochondrial small subunit assembly intermediate (State B) | ELECTRON MICROSCOPY | 2.54 | 802 |
| 37 | 8CSP|1|A | Human mitochondrial small subunit assembly intermediate (State A) | ELECTRON MICROSCOPY | 2.66 | 737 |
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