Equivalence class NR_all_93855.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6VMI|1|AA (rep) | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 2020-08-05 |
| 2 | 6VLZ|1|AA | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 2020-08-05 |
| 3 | 6RW4|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | ELECTRON MICROSCOPY | 2.97 | 2020-06-03 |
| 4 | 6RW5|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | ELECTRON MICROSCOPY | 3.14 | 2020-06-03 |
| 5 | 7A5I|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 2020-12-23 |
| 6 | 7A5K|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 2020-12-23 |
| 7 | 6ZSC|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 2020-09-16 |
| 8 | 6ZSD|1|AA | Small subunit ribosomal RNA | 12SrRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 2020-09-16 |
| 9 | 3J9M|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 2015-04-15 |
| 10 | 6ZSA|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 2020-10-21 |
| 11 | 6ZSG|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 2020-10-14 |
| 12 | 6ZS9|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 2020-10-14 |
| 13 | 7A5G|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 2020-12-23 |
| 14 | 6NU2|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 2019-04-17 |
| 15 | 7A5F|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 2020-12-23 |
| 16 | 6ZSB|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 2020-09-16 |
| 17 | 6NU3|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 4.4 | 2019-04-17 |
| 18 | 6ZSE|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 2020-09-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_93855.4 | NR_all_93855.3 | 3.158 | (14) 6NU2|1|AA, 6ZSB|1|AA, 3J9M|1|AA, 6ZSA|1|AA, 6ZS9|1|AA, 6VMI|1|AA, 6VLZ|1|AA, 6ZSG|1|AA, 6RW5|1|A, 6ZSE|1|AA, 6RW4|1|A, 6ZSD|1|AA, 6NU3|1|AA, 6ZSC|1|AA | (4) 7A5I|1|A6, 7A5G|1|A6, 7A5F|1|A6, 7A5K|1|A6 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_93855.4 | NR_all_93855.5 | 3.161 | (18) 3J9M|1|AA, 6ZSA|1|AA, 7A5I|1|A6, 6ZS9|1|AA, 7A5G|1|A6, 6VMI|1|AA, 7A5F|1|A6, 6VLZ|1|AA, 6ZSG|1|AA, 6RW5|1|A, 6ZSE|1|AA, 6RW4|1|A, 6ZSD|1|AA, 6NU3|1|AA, 6ZSC|1|AA, 6NU2|1|AA, 6ZSB|1|AA, 7A5K|1|A6 | (0) | (2) 6ZM6|1|AA, 6ZM5|1|AA |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6NU3|1|AA | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 4.4 | 923 |
| 2 | 6NU2|1|AA | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 923 |
| 3 | 6ZSE|1|AA | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 927 |
| 4 | 6ZS9|1|AA | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 927 |
| 5 | 6ZSC|1|AA | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 927 |
| 6 | 6ZSB|1|AA | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 927 |
| 7 | 6ZSD|1|AA | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 927 |
| 8 | 6ZSG|1|AA | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 927 |
| 9 | 6ZSA|1|AA | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 927 |
| 10 | 7A5K|1|A6 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 928 |
| 11 | 7A5F|1|A6 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 928 |
| 12 | 7A5G|1|A6 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 928 |
| 13 | 7A5I|1|A6 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 928 |
| 14 | 3J9M|1|AA | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 923 |
| 15 | 6RW5|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | ELECTRON MICROSCOPY | 3.14 | 950 |
| 16 | 6RW4|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | ELECTRON MICROSCOPY | 2.97 | 950 |
| 17 | 6VMI|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 944 |
| 18 | 6VLZ|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 944 |