Equivalence class NR_all_95556.1 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V8U|1|CV (rep) | MRNA, RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
| 2 | 4V8U|1|AV | MRNA, RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
| 3 | 4V90|1|AV | RNA (77-MER), 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3' | Thermus thermophilus | Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 2014-07-09 |
| 4 | 3BBV|1|z | tRNA(Phe) | Thermus thermophilus | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | ELECTRON MICROSCOPY | 10 | 2008-10-21 |
| 5 | 4V68|1|AW | E-SITE TRNA | Thermus thermophilus | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 2014-07-09 |
| 6 | 4V5A|1|AV+ 4V5A|1|AX | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
| 7 | 4V5A|1|CV+ 4V5A|1|CX | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_95556.1 | NR_20.0_95556.2 | 2.7 | (7) 3BBV|1|z, 4V5A|1|AV+4V5A|1|AX, 4V68|1|AW, 4V8U|1|AV, 4V8U|1|CV, 4V5A|1|CV+4V5A|1|CX, 4V90|1|AV | (0) | (3) 4WT8|1|C3, 4WT8|1|D3, 4WT8|1|C2 |
| NR_all_95556.1 | NR_3.0_95556.2 | 2.7 | (1) 4V90|1|AV | (6) 3BBV|1|z, 4V8U|1|AV, 4V68|1|AW, 4V5A|1|CV+4V5A|1|CX, 4V5A|1|AV+4V5A|1|AX, 4V8U|1|CV | (0) |
| NR_all_95556.1 | NR_3.5_95556.2 | 2.7 | (3) 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V90|1|AV | (4) 4V8U|1|AV, 4V68|1|AW, 3BBV|1|z, 4V8U|1|CV | (3) 4WT8|1|C2, 4WT8|1|C3, 4WT8|1|D3 |
| NR_all_95556.1 | NR_4.0_95556.2 | 2.7 | (5) 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|AV, 4V8U|1|CV, 4V90|1|AV | (2) 3BBV|1|z, 4V68|1|AW | (3) 4WT8|1|C3, 4WT8|1|C2, 4WT8|1|D3 |
| NR_all_95556.1 | NR_all_95556.2 | 2.7 | (7) 3BBV|1|z, 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|AV, 4V8U|1|CV, 4V90|1|AV, 4V68|1|AW | (0) | (3) 4WT8|1|C2, 4WT8|1|C3, 4WT8|1|D3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3BBV|1|z | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | ELECTRON MICROSCOPY | 10 | 67 |
| 2 | 4V8U|1|CV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 3 | 4V8U|1|AV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 4 | 4V5A|1|CV+4V5A|1|CX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 5 | 4V5A|1|AV+4V5A|1|AX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 6 | 4V90|1|AV | Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 76 |
| 7 | 4V68|1|AW | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 76 |