Equivalence class NR_all_96683.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5GMF|1|E (rep) | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 2 | 5GMF|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 3 | 5GMF|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 4 | 5GMF|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 5 | 5GMG|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | |||
| 6 | 5GMG|1|C | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | |||
| 7 | 3IE1|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 8 | 3IE1|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 9 | 3IE1|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 10 | 4DR7|1|V | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 | |||
| 11 | 3IE1|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 12 | 3S4G|1|C+ 3S4G|1|B | RNA (5'-R(P*UP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*A)-3') | Low Resolution Structure of STNV complexed with RNA | X-ray diffraction | 6 | 2011-08-03 | ||||
| 13 | 2QQP|1|R | RNA (5'-R(*UP*UP*UP*U)-3') | Crystal Structure of Authentic Providence Virus | X-ray diffraction | 3.8 | 2009-01-20 | ||||
| 14 | 2ZDE|1|E | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 15 | 2ZDE|1|F | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 16 | 2ZDE|1|H | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 17 | 2ZDE|1|G | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 18 | 1NB7|1|E | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 | ||||
| 19 | 1NB7|1|F | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 |
Release history
| Release | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_96683.2 | NR_all_96683.1 | 3.0 | (15) 3IE1|1|F, 5GMF|1|H, 3IE1|1|E, 5GMF|1|G, 2QQP|1|R, 5GMF|1|F, 1NB7|1|F, 5GMF|1|E, 1NB7|1|E, 4DR7|1|V, 3S4G|1|C+3S4G|1|B, 3IE1|1|H, 5GMG|1|D, 3IE1|1|G, 5GMG|1|C | (4) 2ZDE|1|E, 2ZDE|1|H, 2ZDE|1|G, 2ZDE|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_96683.2 | NR_all_96683.3 | 3.46 | (19) 5GMF|1|F, 5GMF|1|E, 4DR7|1|V, 3S4G|1|C+3S4G|1|B, 3IE1|1|H, 3IE1|1|G, 3IE1|1|F, 3IE1|1|E, 2ZDE|1|H, 2ZDE|1|G, 2ZDE|1|F, 2ZDE|1|E, 2QQP|1|R, 5GMG|1|D, 1NB7|1|F, 5GMG|1|C, 1NB7|1|E, 5GMF|1|H, 5GMF|1|G | (0) | (1) 5Z4J|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5GMG|1|D | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 2 | 5GMF|1|H | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 3 | 5GMF|1|F | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 4 | 5GMF|1|E | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 5 | 5GMF|1|G | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 6 | 5GMG|1|C | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 7 | 3IE1|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 8 | 2ZDE|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 9 | 2ZDE|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 10 | 3IE1|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 11 | 3IE1|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 12 | 2ZDE|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 13 | 3S4G|1|C+3S4G|1|B | Low Resolution Structure of STNV complexed with RNA | X-RAY DIFFRACTION | 6 | 4 |
| 14 | 4DR7|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 4 |
| 15 | 2QQP|1|R | Crystal Structure of Authentic Providence Virus | X-RAY DIFFRACTION | 3.8 | 4 |
| 16 | 3IE1|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |
| 17 | 1NB7|1|F | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 18 | 1NB7|1|E | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 19 | 2ZDE|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |