BGSU RNA Site //

Equivalence class NR_all_97435.4 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16TPQ|1|V (rep)5S ribosomal RNApre-5S rRNABacillus subtilisBacteriaRF00001RNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072020-09-30
26TNN|1|V5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072020-09-30
36HA1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12018-08-29
46HA8|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52018-08-29
56PPF|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Bacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42019-09-18
65NJT|1|V5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82017-06-14
73J9W|1|BB5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92015-04-29
86HTQ|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.52019-10-23
96PPK|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001RbgA+45SRbgA complexELECTRON MICROSCOPY4.42019-09-18
103J3V|1|B5S ribosomal RNAribosome RNA 5SBacillus subtilisBacteriaRF00001Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)ELECTRON MICROSCOPY13.32013-06-12

Release history

Release3.1463.1473.1483.1493.1503.1513.1523.153
Date2020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_97435.4NR_all_97435.33.146(8) 6HA8|1|B, 6HA1|1|B, 5NJT|1|V, 3J9W|1|BB, 3J3V|1|B, 6PPK|1|B, 6PPF|1|B, 6HTQ|1|B(2) 6TNN|1|V, 6TPQ|1|V(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_97435.4NR_all_97435.53.154(10) 5NJT|1|V, 3J9W|1|BB, 6TPQ|1|V, 3J3V|1|B, 6TNN|1|V, 6PPK|1|B, 6PPF|1|B, 6HTQ|1|B, 6HA8|1|B, 6HA1|1|B(0) (2) 7AQD|1|B, 7AQC|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16PPK|1|BRbgA+45SRbgA complexELECTRON MICROSCOPY4.4112
26PPF|1|BBacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.4112
36TNN|1|VMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.07116
46TPQ|1|VRNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.07123
53J9W|1|BBCryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.9112
65NJT|1|VStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.8112
76HTQ|1|BStringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.5112
86HA1|1|BCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.1112
96HA8|1|BCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.5112
103J3V|1|BAtomic model of the immature 50S subunit from Bacillus subtilis (state I-a)ELECTRON MICROSCOPY13.3119