1FG0 | Motifs

Download loops

14 Hairpin loops
18 Internal loops
3 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_1FG0_001 ➜	1/A/2068:2077	NA	NA
2	HL_1FG0_004 ➜	1/A/2281:2289	NA	NA
3	HL_1FG0_005 ➜	1/A/2298:2310	NA	NA
4	HL_1FG0_007 ➜	1/A/2358:2365	NA	NA
5	HL_1FG0_008 ➜	1/A/2389:2399	NA	NA
6	HL_1FG0_009 ➜	1/A/2411:2416	NA	NA
7	HL_1FG0_010 ➜	1/A/2442:2450	NA	NA
8	HL_1FG0_013 ➜	1/A/2585:2593	NA	NA
9	HL_1FG0_014 ➜	1/A/2629:2634	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1FG0_002 ➜	missing nts	NA
2	HL_1FG0_003 ➜	all high RSRZ	NA
3	HL_1FG0_006 ➜	missing nts	NA
4	HL_1FG0_011 ➜	all high RSRZ	NA
5	HL_1FG0_012 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_1FG0_001 ➜	1/A/2090:2093,1/A/2652:2654	NA	NA
2	IL_1FG0_003 ➜	1/A/2106:2110,1/A/2477:2480	NA	NA
3	IL_1FG0_004 ➜	1/A/2111:2112,1/A/2473:2476	NA	NA
4	IL_1FG0_005 ➜	1/A/2122:2124,1/A/2269:2272	NA	NA
5	IL_1FG0_006 ➜	1/A/2279:2280,1/A/2290:2292	NA	NA
6	IL_1FG0_008 ➜	1/A/2436:2438,1/A/2454:2455	NA	NA
7	IL_1FG0_009 ➜	1/A/2489:2490,1/A/2531:2533	NA	NA
8	IL_1FG0_010 ➜	1/A/2492:2494,1/A/2528:2529	NA	NA
9	IL_1FG0_011 ➜	1/A/2494:2496,1/A/2524:2528	NA	NA
10	IL_1FG0_012 ➜	1/A/2501:2505,1/A/2515:2519	NA	NA
11	IL_1FG0_013 ➜	1/A/2542:2543,1/A/2615:2617	NA	NA
12	IL_1FG0_014 ➜	1/A/2545:2547,1/A/2609:2613	NA	NA
13	IL_1FG0_018 ➜	1/A/2626:2627,1/A/2636:2638	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1FG0_002 ➜	all high RSRZ	NA
2	IL_1FG0_007 ➜	all high RSRZ	NA
3	IL_1FG0_015 ➜	all high RSRZ	NA
4	IL_1FG0_016 ➜	all high RSRZ	NA
5	IL_1FG0_017 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_1FG0_001 ➜	1/A/2131:2134,1/A/2241:2245,1/A/2256:2262	NA	NA
2	J3_1FG0_002 ➜	1/A/2329:2331,1/A/2355:2357,1/A/2366:2371	NA	NA
3	J3_1FG0_003 ➜	1/A/2552:2555,1/A/2580:2583,1/A/2595:2602	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

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