1VQO Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1VQO_001 | 1/0/55:64 | No text annotation Not in a motif group | homologous HL_4V9F_001 HL_55136.1 | |
| HL_1VQO_002 | 1/0/83:91 | No text annotation Not in a motif group | homologous HL_4V9F_002 HL_44769.1 | |
| HL_1VQO_003 | 1/0/118:122 | No text annotation Not in a motif group | homologous HL_4V9F_003 HL_94352.4 | |
| HL_1VQO_005 | 1/0/136:142 | No text annotation Not in a motif group | homologous HL_4V9F_005 HL_79299.11 | |
| HL_1VQO_006 | 1/0/164:171 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_23481.5 | |
| HL_1VQO_007 | 1/0/195:201 | No text annotation Not in a motif group | homologous HL_4V9F_007 HL_12053.1 | |
| HL_1VQO_008 | 1/0/217:223 | No text annotation Not in a motif group | homologous HL_4V9F_008 HL_67216.5 | |
| HL_1VQO_009 | 1/0/252:257 | GNRA Not in a motif group | homologous HL_4V9F_009 HL_43074.18 | |
| HL_1VQO_010 | 1/0/312:319 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V9F_010 HL_68493.6 | |
| HL_1VQO_011 | 1/0/326:330 | No text annotation Not in a motif group | homologous HL_4V9F_011 HL_98557.5 | |
| HL_1VQO_012 | 1/0/334:342 | No text annotation Not in a motif group | homologous HL_4V9F_012 HL_08002.6 | |
| HL_1VQO_013 | 1/0/390:399 | No text annotation Not in a motif group | homologous HL_4V9F_013 HL_10536.1 | |
| HL_1VQO_014 | 1/0/416:424 | No text annotation Not in a motif group | homologous HL_4V9F_014 HL_46142.8 | |
| HL_1VQO_015 | 1/0/468:473 | GNRA Not in a motif group | homologous HL_4V9F_015 HL_43074.18 | |
| HL_1VQO_016 | 1/0/493:499 | GNRA with one bulged base Not in a motif group | homologous HL_4V9F_016 HL_02361.6 | |
| HL_1VQO_017 | 1/0/576:581 | GNRA Not in a motif group | homologous HL_4V9F_017 HL_43074.18 | |
| HL_1VQO_019 | 1/0/670:676 | No text annotation Not in a motif group | homologous HL_4V9F_019 HL_37407.2 | |
| HL_1VQO_020 | 1/0/690:695 | GNRA Not in a motif group | homologous HL_4V9F_020 HL_43074.18 | |
| HL_1VQO_022 | 1/0/733:738 | Other HL Not in a motif group | homologous HL_4V9F_022 HL_43074.18 | |
| HL_1VQO_023 | 1/0/804:809 | GNRA Not in a motif group | homologous HL_4V9F_023 HL_43074.18 | |
| HL_1VQO_024 | 1/0/837:846 | No text annotation Not in a motif group | homologous HL_4V9F_024 HL_39334.5 | |
| HL_1VQO_025 | 1/0/872:878 | No text annotation Not in a motif group | homologous HL_4V9F_025 HL_16898.3 | |
| HL_1VQO_026 | 1/0/919:924 | No text annotation Not in a motif group | homologous HL_4V9F_026 HL_15942.5 | |
| HL_1VQO_028 | 1/0/1054:1060 | GNRA Not in a motif group | homologous HL_4V9F_028 HL_43074.18 | |
| HL_1VQO_029 | 1/0/1076:1083 | No text annotation Not in a motif group | homologous HL_4V9F_029 HL_72451.5 | |
| HL_1VQO_032 | 1/0/1274:1282 | No text annotation Not in a motif group | homologous HL_4V9F_032 HL_82851.1 | |
| HL_1VQO_033 | 1/0/1326:1331 | GNRA Not in a motif group | homologous HL_4V9F_033 HL_43074.18 | |
| HL_1VQO_034 | 1/0/1387:1395 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9F_034 HL_33239.17 | |
| HL_1VQO_035 | 1/0/1430:1436 | No text annotation Not in a motif group | homologous HL_4V9F_035 HL_86880.5 | |
| HL_1VQO_036 | 1/0/1468:1474 | GNRA Not in a motif group | homologous HL_4V9F_036 HL_43074.18 | |
| HL_1VQO_037 | 1/0/1498:1507 | No text annotation Not in a motif group | homologous HL_4V9F_037 HL_78457.4 | |
| HL_1VQO_039 | 1/0/1594:1600 | Other HL Not in a motif group | homologous HL_4V9F_039 HL_68493.6 | |
| HL_1VQO_040 | 1/0/1628:1633 | GNRA Not in a motif group | homologous HL_4V9F_040 HL_43074.18 | |
| HL_1VQO_041 | 1/0/1651:1655 | No text annotation Not in a motif group | homologous HL_4V9F_041 HL_69353.7 | |
| HL_1VQO_042 | 1/0/1687:1694 | No text annotation Not in a motif group | homologous HL_4V9F_042 HL_66171.3 | |
| HL_1VQO_043 | 1/0/1705:1713 | No text annotation Not in a motif group | homologous HL_4V9F_043 HL_21000.1 | |
| HL_1VQO_044 | 1/0/1769:1774 | UNCG Not in a motif group | homologous HL_4V9F_044 HL_79299.11 | |
| HL_1VQO_045 | 1/0/1793:1799 | GNRA Not in a motif group | homologous HL_4V9F_045 HL_43074.18 | |
| HL_1VQO_046 | 1/0/1808:1812 | No text annotation Not in a motif group | homologous HL_4V9F_046 HL_79272.3 | |
| HL_1VQO_047 | 1/0/1833:1843 | No text annotation Not in a motif group | homologous HL_4V9F_047 HL_43613.4 | |
| HL_1VQO_048 | 1/0/1862:1867 | GNRA Not in a motif group | homologous HL_4V9F_048 HL_43074.18 | |
| HL_1VQO_049 | 1/0/1916:1923 | No text annotation Not in a motif group | homologous HL_4V9F_049 HL_53760.4 | |
| HL_1VQO_051 | 1/0/1990:1998 | No text annotation Not in a motif group | homologous HL_4V9F_051 HL_53760.4 | |
| HL_1VQO_052 | 1/0/2068:2077 | No text annotation Not in a motif group | homologous HL_4V9F_052 HL_90642.5 | |
| HL_1VQO_054 | 1/0/2248:2253 | GNRA Not in a motif group | homologous HL_4V9F_054 HL_43074.18 | |
| HL_1VQO_055 | 1/0/2281:2289 | No text annotation Not in a motif group | homologous HL_4V9F_055 HL_46891.3 | |
| HL_1VQO_056 | 1/0/2298:2310 | No text annotation Not in a motif group | homologous HL_4V9F_056 HL_19870.5 | |
| HL_1VQO_058 | 1/0/2358:2365 | No text annotation Not in a motif group | homologous HL_4V9F_058 HL_46142.8 | |
| HL_1VQO_059 | 1/0/2389:2399 | No text annotation Not in a motif group | homologous HL_4V9F_059 HL_72419.1 | |
| HL_1VQO_060 | 1/0/2411:2416 | GNRA Not in a motif group | homologous HL_4V9F_060 HL_43074.18 | |
| HL_1VQO_061 | 1/0/2442:2450 | No text annotation Not in a motif group | homologous HL_4V9F_061 HL_46142.8 | |
| HL_1VQO_062 | 1/0/2506:2514 | No text annotation Not in a motif group | homologous HL_4V9F_062 HL_36421.5 | |
| HL_1VQO_063 | 1/0/2563:2570 | No text annotation Not in a motif group | homologous HL_4V9F_063 HL_92681.5 | |
| HL_1VQO_064 | 1/0/2585:2593 | No text annotation Not in a motif group | homologous HL_4V9F_064 NA | |
| HL_1VQO_065 | 1/0/2629:2634 | GNRA Not in a motif group | homologous HL_4V9F_065 HL_43074.18 | |
| HL_1VQO_066 | 1/0/2695:2700 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_43074.18 | |
| HL_1VQO_067 | 1/0/2737:2742 | Ribsomal LSU H95 Not in a motif group | homologous HL_4V9F_067 HL_67719.1 | |
| HL_1VQO_068 | 1/0/2780:2794 | No text annotation Not in a motif group | homologous HL_4V9F_068 HL_56677.5 | |
| HL_1VQO_069 | 1/0/2836:2844 | No text annotation Not in a motif group | homologous HL_4V9F_069 HL_05018.6 | |
| HL_1VQO_070 | 1/0/2876:2881 | GNRA Not in a motif group | homologous HL_4V9F_070 HL_43074.18 | |
| HL_1VQO_071 | 1/9/3037:3043 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_02733.5 | |
| HL_1VQO_072 | 1/9/3089:3094 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1VQO_004 | No text annotation | ||
| HL_1VQO_018 | No text annotation | ||
| HL_1VQO_021 | No text annotation | ||
| HL_1VQO_027 | No text annotation | ||
| HL_1VQO_030 | No text annotation | ||
| HL_1VQO_031 | No text annotation | ||
| HL_1VQO_038 | No text annotation | ||
| HL_1VQO_050 | No text annotation | ||
| HL_1VQO_053 | No text annotation | ||
| HL_1VQO_057 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1VQO_001 | 1/0/21:27, 1/0/516:522 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4V9F_001 IL_66414.5 | |
| IL_1VQO_002 | 1/0/33:34, 1/0/448:450 | Single bulged A Not in a motif group | homologous IL_4V9F_002 IL_80007.16 | |
| IL_1VQO_003 | 1/0/39:41, 1/0/440:443 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V9F_003 IL_95485.6 | |
| IL_1VQO_004 | 1/0/77:81, 1/0/93:100 | Kink-turn Not in a motif group | homologous IL_4V9F_004 IL_29549.9 | |
| IL_1VQO_005 | 1/0/153:154, 1/0/182:184 | Single stack bend Not in a motif group | homologous IL_4V9F_005 IL_04038.4 | |
| IL_1VQO_006 | 1/0/158:164, 1/0/171:178 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_006 IL_04346.5 | |
| IL_1VQO_007 | 1/0/210:216, 1/0/224:229 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_007 IL_35110.5 | |
| IL_1VQO_008 | 1/0/245:248, 1/0/265:266 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V9F_008 IL_70995.6 | |
| IL_1VQO_009 | 1/0/248:249, 1/0/260:265 | No text annotation Not in a motif group | geometric IL_4V9F_009 IL_19724.1 | |
| IL_1VQO_010 | 1/0/274:275, 1/0/374:376 | Single bulged G Not in a motif group | homologous IL_4V9F_010 IL_59137.10 | |
| IL_1VQO_011 | 1/0/280:287, 1/0/365:369 | No text annotation Not in a motif group | homologous IL_4V9F_011 IL_77870.1 | |
| IL_1VQO_012 | 1/0/287:290, 1/0/362:365 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_85877.10 | |
| IL_1VQO_013 | 1/0/290:296, 1/0/355:362 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | homologous IL_4V9F_012 IL_59724.1 | |
| IL_1VQO_014 | 1/0/307:309, 1/0/322:323 | Single bulged U Not in a motif group | homologous IL_4V9F_013 IL_83039.11 | |
| IL_1VQO_015 | 1/0/487:491, 1/0/501:515 | No text annotation Not in a motif group | homologous IL_4V9F_014 IL_31504.1 | |
| IL_1VQO_016 | 1/0/548:553, 1/0/606:608 | No text annotation Not in a motif group | homologous IL_4V9F_015 IL_02413.1 | |
| IL_1VQO_017 | 1/0/554:555, 1/0/602:605 | No text annotation Not in a motif group | homologous IL_4V9F_016 IL_55658.1 | |
| IL_1VQO_018 | 1/0/558:561, 1/0/596:599 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_85877.10 | |
| IL_1VQO_019 | 1/0/562:567, 1/0/591:595 | Triple sheared related Not in a motif group | homologous IL_4V9F_018 IL_64879.1 | |
| IL_1VQO_020 | 1/0/567:572, 1/0/585:591 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4V9F_019 IL_35110.5 | |
| IL_1VQO_021 | 1/0/663:667, 1/0/679:683 | AAA cross-strand stack Not in a motif group | homologous IL_4V9F_020 IL_56467.6 | |
| IL_1VQO_022 | 1/0/699:702, 1/0/726:727 | Multiple bulged bases Not in a motif group | homologous IL_4V9F_021 IL_13730.12 | |
| IL_1VQO_023 | 1/0/705:709, 1/0/719:723 | tSH-tHW-tHS Not in a motif group | homologous IL_4V9F_022 IL_39521.5 | |
| IL_1VQO_024 | 1/0/763:765, 1/0/899:901 | No text annotation Not in a motif group | geometric IL_4V9F_023 IL_01312.13 | |
| IL_1VQO_025 | 1/0/765:769, 1/0/892:899 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4V9F_024 IL_17470.5 | |
| IL_1VQO_026 | 1/0/788:789, 1/0/856:858 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_80007.16 | |
| IL_1VQO_027 | 1/0/793:794, 1/0/819:821 | Single bulged G Not in a motif group | homologous IL_4V9F_026 IL_59137.10 | |
| IL_1VQO_028 | 1/0/794:798, 1/0/815:819 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.6 | |
| IL_1VQO_029 | 1/0/830:833, 1/0/849:851 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V9F_028 IL_95485.6 | |
| IL_1VQO_030 | 1/0/834:836, 1/0/847:848 | Single bulged U Not in a motif group | homologous IL_4V9F_029 IL_83039.11 | |
| IL_1VQO_031 | 1/0/868:870, 1/0/880:884 | No text annotation Not in a motif group | ||
| IL_1VQO_032 | 1/0/936:940, 1/0/1026:1034 | Kink-turn Not in a motif group | homologous IL_4V9F_031 IL_29549.9 | |
| IL_1VQO_033 | 1/0/942:944, 1/0/1023:1024 | Single bulged A Not in a motif group | homologous IL_4V9F_032 IL_06437.11 | |
| IL_1VQO_034 | 1/0/952:956, 1/0/1011:1015 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4V9F_033 IL_83354.1 | |
| IL_1VQO_035 | 1/0/956:957, 1/0/1009:1011 | Minor groove platform Not in a motif group | homologous IL_4V9F_034 IL_06437.11 | |
| IL_1VQO_036 | 1/0/958:964, 1/0/1004:1008 | No text annotation Not in a motif group | homologous IL_4V9F_035 IL_21121.1 | |
| IL_1VQO_037 | 1/0/965:968, 1/0/1000:1003 | No text annotation Not in a motif group | homologous IL_4V9F_036 IL_21570.1 | |
| IL_1VQO_038 | 1/0/1095:1099, 1/0/1257:1261 | UAA/GAN Not in a motif group | homologous IL_4V9F_037 IL_53523.5 | |
| IL_1VQO_039 | 1/0/1101:1108, 1/0/1254:1255 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V9F_038 IL_15861.6 | |
| IL_1VQO_040 | 1/0/1108:1110, 1/0/1253:1254 | Single bulged U Not in a motif group | geometric IL_4V9F_039 IL_83039.11 | |
| IL_1VQO_041 | 1/0/1115:1121, 1/0/1243:1248 | No text annotation Not in a motif group | homologous IL_4V9F_040 IL_57188.3 | |
| IL_1VQO_042 | 1/0/1136:1138, 1/0/1225:1226 | Single bulged G Not in a motif group | homologous IL_4V9F_041 IL_85053.1 | |
| IL_1VQO_043 | 1/0/1147:1155, 1/0/1212:1216 | Kink-turn Not in a motif group | homologous IL_4V9F_042 IL_90538.3 | |
| IL_1VQO_045 | 1/0/1269:1270, 1/0/1286:1289 | No text annotation Not in a motif group | homologous IL_4V9F_045 IL_12418.1 | |
| IL_1VQO_046 | 1/0/1301:1303, 1/0/1351:1354 | Isolated cWS basepair Not in a motif group | homologous IL_4V9F_046 IL_67621.5 | |
| IL_1VQO_047 | 1/0/1303:1305, 1/0/1349:1351 | No text annotation Not in a motif group | geometric IL_4V9F_047 IL_01312.13 | |
| IL_1VQO_048 | 1/0/1312:1319, 1/0/1338:1342 | Kink-turn Not in a motif group | homologous IL_4V9F_048 IL_29549.9 | |
| IL_1VQO_049 | 1/0/1367:1373, 1/0/2052:2057 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_049 IL_35110.5 | |
| IL_1VQO_050 | 1/0/1416:1419, 1/0/1678:1679 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V9F_050 IL_70995.6 | |
| IL_1VQO_051 | 1/0/1425:1429, 1/0/1437:1439 | C-loop Not in a motif group | homologous IL_4V9F_051 IL_63596.4 | |
| IL_1VQO_052 | 1/0/1456:1460, 1/0/1483:1489 | UAA/GAN Not in a motif group | homologous IL_4V9F_052 IL_53523.5 | |
| IL_1VQO_053 | 1/0/1465:1467, 1/0/1475:1478 | No text annotation Not in a motif group | homologous IL_4V9F_053 IL_87332.1 | |
| IL_1VQO_054 | 1/0/1521:1529, 1/0/1662:1665 | No text annotation Not in a motif group | homologous IL_4V9F_054 IL_69457.1 | |
| IL_1VQO_055 | 1/0/1542:1546, 1/0/1639:1643 | tSH-tHW-tHS Not in a motif group | homologous IL_4V9F_055 IL_39521.5 | |
| IL_1VQO_056 | 1/0/1570:1574, 1/0/1622:1627 | tSH-tHH-tHS Not in a motif group | homologous IL_4V9F_056 IL_62654.1 | |
| IL_1VQO_057 | 1/0/1578:1583, 1/0/1612:1618 | No text annotation Not in a motif group | homologous IL_4V9F_057 IL_66497.1 | |
| IL_1VQO_058 | 1/0/1587:1592, 1/0/1602:1608 | Kink-turn Not in a motif group | homologous IL_4V9F_058 IL_16456.1 | |
| IL_1VQO_059 | 1/0/1728:1734, 1/0/2045:2047 | No text annotation Not in a motif group | homologous IL_4V9F_059 IL_12566.2 | |
| IL_1VQO_060 | 1/0/1741:1743, 1/0/2036:2038 | Isolated tWW turn Not in a motif group | homologous IL_4V9F_060 IL_54997.5 | |
| IL_1VQO_061 | 1/0/1744:1747, 1/0/2034:2035 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V9F_061 IL_70995.6 | |
| IL_1VQO_062 | 1/0/1747:1752, 1/0/2031:2034 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_01312.13 | |
| IL_1VQO_063 | 1/0/1764:1769, 1/0/1774:1780 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_66584.5 | |
| IL_1VQO_064 | 1/0/1826:1827, 1/0/2021:2023 | Single bulged A Not in a motif group | homologous IL_4V9F_064 IL_80007.16 | |
| IL_1VQO_065 | 1/0/1854:1860, 1/0/1869:1877 | Kink-turn related Not in a motif group | homologous IL_4V9F_065 IL_17069.3 | |
| IL_1VQO_066 | 1/0/1893:1896, 1/0/1943:1944 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4V9F_066 IL_31836.1 | |
| IL_1VQO_067 | 1/0/1897:1898, 1/0/1939:1942 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4V9F_067 IL_13730.12 | |
| IL_1VQO_068 | 1/0/1902:1905, 1/0/1934:1935 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_068 IL_09061.4 | |
| IL_1VQO_069 | 1/0/1907:1913, 1/0/1926:1932 | No text annotation Not in a motif group | homologous IL_4V9F_069 IL_36973.5 | |
| IL_1VQO_070 | 1/0/1974:1975, 1/0/2005:2008 | No text annotation Not in a motif group | geometric IL_4V9F_070 IL_69632.1 | |
| IL_1VQO_071 | 1/0/1975:1986, 1/0/2002:2005 | No text annotation Not in a motif group | homologous IL_4V9F_071 IL_70285.1 | |
| IL_1VQO_072 | 1/0/2090:2093, 1/0/2652:2654 | No text annotation Not in a motif group | homologous IL_4V9F_072 IL_23663.4 | |
| IL_1VQO_073 | 1/0/2095:2097, 1/0/2647:2650 | No text annotation Not in a motif group | homologous IL_4V9F_073 IL_54678.3 | |
| IL_1VQO_074 | 1/0/2108:2110, 1/0/2477:2478 | Single bulged U Not in a motif group | homologous IL_4V9F_074 IL_83039.11 | |
| IL_1VQO_075 | 1/0/2111:2112, 1/0/2473:2476 | Minor groove platform Not in a motif group | homologous IL_4V9F_075 IL_06437.11 | |
| IL_1VQO_076 | 1/0/2122:2124, 1/0/2269:2272 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4V9F_076 IL_38958.6 | |
| IL_1VQO_077 | 1/0/2279:2280, 1/0/2290:2292 | Single bulged A Not in a motif group | homologous IL_4V9F_079 IL_80007.16 | |
| IL_1VQO_078 | 1/0/2331:2333, 1/0/2351:2355 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4V9F_080 IL_38958.6 | |
| IL_1VQO_079 | 1/0/2436:2438, 1/0/2454:2455 | Single stack bend Not in a motif group | homologous IL_4V9F_081 IL_04038.4 | |
| IL_1VQO_080 | 1/0/2488:2489, 1/0/2533:2535 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_04038.4 | |
| IL_1VQO_081 | 1/0/2489:2490, 1/0/2531:2533 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_80663.10 | |
| IL_1VQO_082 | 1/0/2492:2494, 1/0/2528:2529 | Major groove platform Not in a motif group | homologous IL_4V9F_083 IL_95601.1 | |
| IL_1VQO_083 | 1/0/2494:2496, 1/0/2524:2528 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4V9F_084 IL_96042.4 | |
| IL_1VQO_084 | 1/0/2501:2505, 1/0/2515:2519 | Triple sheared Not in a motif group | homologous IL_4V9F_085 IL_56467.6 | |
| IL_1VQO_085 | 1/0/2542:2543, 1/0/2615:2617 | Major groove platform Not in a motif group | homologous IL_4V9F_086 IL_02060.4 | |
| IL_1VQO_086 | 1/0/2545:2547, 1/0/2609:2613 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4V9F_087 IL_55456.1 | |
| IL_1VQO_087 | 1/0/2547:2548, 1/0/2606:2609 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_088 IL_13730.12 | |
| IL_1VQO_088 | 1/0/2557:2558, 1/0/2575:2578 | Minor groove platform with intercalation Not in a motif group | homologous IL_4V9F_089 IL_95601.1 | |
| IL_1VQO_089 | 1/0/2626:2627, 1/0/2636:2638 | Single bulged A Not in a motif group | geometric IL_1CSL_002 IL_80007.16 | |
| IL_1VQO_090 | 1/0/2672:2676, 1/0/2809:2817 | No text annotation Not in a motif group | geometric IL_5J7L_345 IL_03420.1 | |
| IL_1VQO_091 | 1/0/2689:2695, 1/0/2700:2705 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_4V9F_092 IL_35110.5 | |
| IL_1VQO_092 | 1/0/2717:2721, 1/0/2761:2763 | C-loop Not in a motif group | homologous IL_4V9F_093 IL_63596.4 | |
| IL_1VQO_093 | 1/0/2724:2728, 1/0/2754:2758 | UAA/GAN Not in a motif group | homologous IL_4V9F_094 IL_53523.5 | |
| IL_1VQO_094 | 1/0/2732:2733, 1/0/2746:2750 | No text annotation Not in a motif group | homologous IL_4V9F_095 IL_75330.1 | |
| IL_1VQO_095 | 1/0/2772:2777, 1/0/2797:2802 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.4 | |
| IL_1VQO_096 | 1/0/2855:2857, 1/0/2900:2903 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4V9F_097 IL_01312.13 | |
| IL_1VQO_097 | 1/0/2860:2861, 1/0/2895:2897 | Single bulged A Not in a motif group | homologous IL_4V9F_098 IL_80007.16 | |
| IL_1VQO_098 | 1/0/2864:2869, 1/0/2888:2892 | No text annotation Not in a motif group | homologous IL_4V9F_099 IL_83162.3 | |
| IL_1VQO_099 | 1/0/2873:2876, 1/0/2881:2884 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.7 | |
| IL_1VQO_100 | 1/9/3015:3016, 1/9/3064:3066 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_40508.4 | |
| IL_1VQO_101 | 1/9/3021:3028, 1/9/3054:3059 | No text annotation Not in a motif group | ||
| IL_1VQO_102 | 1/9/3029:3030, 1/9/3050:3053 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.4 | |
| IL_1VQO_103 | 1/9/3033:3037, 1/9/3043:3047 | Symmetric double minor groove platform Not in a motif group | geometric IL_4V9F_104 IL_58103.5 | |
| IL_1VQO_104 | 1/9/3075:3081, 1/9/3101:3106 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_106 IL_35110.5 | |
| IL_1VQO_105 | 1/9/3086:3088, 1/9/3095:3096 | Single bulged U Not in a motif group | homologous IL_4V9F_107 IL_83039.11 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1VQO_044 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1VQO_001 | 1/0/240:244, 1/0/267:273, 1/0/377:379 | No text annotation Not in a motif group | homologous J3_4V9F_001 NA | |
| J3_1VQO_002 | 1/0/774:780, 1/0/866:868, 1/0/884:887 | No text annotation Not in a motif group | ||
| J3_1VQO_003 | 1/0/789:791, 1/0/823:828, 1/0/853:856 | No text annotation Not in a motif group | homologous J3_4V9F_003 NA | |
| J3_1VQO_005 | 1/0/1404:1409, 1/0/1700:1703, 1/0/1715:1718 | No text annotation Not in a motif group | homologous J3_4V9F_005 NA | |
| J3_1VQO_006 | 1/0/1412:1415, 1/0/1680:1686, 1/0/1695:1697 | No text annotation Not in a motif group | homologous J3_4V9F_006 NA | |
| J3_1VQO_007 | 1/0/2131:2134, 1/0/2241:2245, 1/0/2256:2262 | No text annotation Not in a motif group | homologous J3_4V9F_007 NA | |
| J3_1VQO_008 | 1/0/2329:2331, 1/0/2355:2357, 1/0/2366:2371 | No text annotation Not in a motif group | ||
| J3_1VQO_009 | 1/0/2552:2555, 1/0/2580:2583, 1/0/2595:2602 | No text annotation Not in a motif group | homologous J3_4V9F_009 NA | |
| J3_1VQO_010 | 1/9/3009:3014, 1/9/3067:3071, 1/9/3110:3114 | No text annotation Not in a motif group | homologous J3_4V9F_010 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1VQO_004 | No text annotation |
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