2YKR Internal, hairpin and 3-way junction loop motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/29:32,1/A/552:554 | NA |
2 | ➜ | 1/A/44:45,1/A/396:398 | NA |
3 | ➜ | 1/A/54:57,1/A/355:357 | NA |
4 | ➜ | 1/A/61:63,1/A/104:106 | NA |
5 | ➜ | 1/A/63:67,1/A/102:104 | NA |
6 | ➜ | 1/A/67:69,1/A/99:102 | NA |
7 | ➜ | 1/A/69:74,1/A/96:99 | NA |
8 | ➜ | 1/A/75:76,1/A/93:95 | NA |
9 | ➜ | 1/A/122:124,1/A/237:239 | NA |
10 | ➜ | 1/A/128:136,1/A/227:233 | NA |
11 | ➜ | 1/A/144:147,1/A/175:178 | NA |
12 | ➜ | 1/A/147:155,1/A/166:175 | NA |
13 | ➜ | 1/A/200:202,1/A/215:217 | NA |
14 | ➜ | 1/A/202:207,1/A/212:215 | NA |
15 | ➜ | 1/A/242:247,1/A/277:284 | NA |
16 | ➜ | 1/A/249:253,1/A/273:275 | NA |
17 | ➜ | 1/A/256:258,1/A/268:270 | NA |
18 | ➜ | 1/A/292:293,1/A/304:308 | NA |
19 | ➜ | 1/A/293:295,1/A/302:304 | NA |
20 | ➜ | 1/A/367:369,1/A/392:393 | NA |
21 | ➜ | 1/A/370:376,1/A/387:391 | NA |
22 | ➜ | 1/A/406:409,1/A/433:436 | NA |
23 | ➜ | 1/A/409:416,1/A/427:433 | NA |
24 | ➜ | 1/A/446:450,1/A/483:488 | NA |
25 | ➜ | 1/A/450:455,1/A/477:483 | NA |
26 | ➜ | 1/A/455:459,1/A/473:477 | NA |
27 | ➜ | 1/A/504:511,1/A/540:541 | NA |
28 | ➜ | 1/A/515:521,1/A/528:536 | NA |
29 | ➜ | 1/A/569:575,1/A/880:881 | NA |
30 | ➜ | 1/A/580:584,1/A/757:761 | NA |
31 | ➜ | 1/A/594:596,1/A/644:645 | NA |
32 | ➜ | 1/A/597:598,1/A/640:643 | NA |
33 | ➜ | 1/A/604:612,1/A/628:634 | NA |
34 | ➜ | 1/A/654:659,1/A/746:754 | NA |
35 | ➜ | 1/A/662:666,1/A/740:743 | NA |
36 | ➜ | 1/A/673:678,1/A/712:717 | NA |
37 | ➜ | 1/A/683:688,1/A/699:707 | NA |
38 | ➜ | 1/A/772:779,1/A/803:807 | NA |
39 | ➜ | 1/A/779:783,1/A/799:803 | NA |
40 | ➜ | 1/A/831:833,1/A/853:855 | NA |
41 | ➜ | 1/A/887:895,1/A/904:910 | NA |
42 | ➜ | 1/A/921:923,1/A/1393:1396 | NA |
43 | ➜ | 1/A/924:927,1/A/1390:1392 | NA |
44 | ➜ | 1/A/933:935,1/A/1380:1384 | NA |
45 | ➜ | 1/A/941:943,1/A/1340:1342 | NA |
46 | ➜ | 1/A/949:951,1/A/1230:1232 | NA |
47 | ➜ | 1/A/993:998,1/A/1043:1045 | NA |
48 | ➜ | 1/A/998:1001,1/A/1039:1043 | NA |
49 | ➜ | 1/A/1048:1050,1/A/1208:1209 | NA |
50 | ➜ | 1/A/1052:1058,1/A/1199:1206 | NA |
51 | ➜ | 1/A/1060:1061,1/A/1195:1197 | NA |
52 | ➜ | 1/A/1121:1128,1/A/1144:1152 | NA |
53 | ➜ | 1/A/1129:1132,1/A/1142:1143 | NA |
54 | ➜ | 1/A/1158:1163,1/A/1173:1181 | NA |
55 | ➜ | 1/A/1246:1253,1/A/1284:1291 | NA |
56 | ➜ | 1/A/1255:1258,1/A/1277:1282 | NA |
57 | ➜ | 1/A/1259:1263,1/A/1272:1276 | NA |
58 | ➜ | 1/A/1303:1308,1/A/1329:1334 | NA |
59 | ➜ | 1/A/1399:1401,1/A/1501:1504 | NA |
60 | ➜ | 1/A/1401:1404,1/A/1497:1501 | NA |
61 | ➜ | 1/A/1405:1407,1/A/1494:1496 | NA |
62 | ➜ | 1/A/1407:1409,1/A/1491:1494 | NA |
63 | ➜ | 1/A/1412:1416,1/A/1484:1488 | NA |
64 | ➜ | 1/A/1416:1419,1/A/1481:1484 | NA |
65 | ➜ | 1/A/1419:1421,1/A/1479:1481 | NA |
66 | ➜ | 1/A/1426:1428,1/A/1472:1474 | NA |
67 | ➜ | 1/A/1437:1439,1/A/1462:1464 | NA |
68 | ➜ | 1/A/1440:1443,1/A/1459:1461 | NA |
69 | ➜ | 1/A/1445:1448,1/A/1455:1457 | NA |
70 | ➜ | 1/A/1428:1437,1/A/1464:1472 | NA |
Problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/12:22 | NA |
2 | ➜ | 1/A/76:93 | NA |
3 | ➜ | 1/A/158:163 | NA |
4 | ➜ | 1/A/186:191 | NA |
5 | ➜ | 1/A/207:212 | NA |
6 | ➜ | 1/A/258:268 | NA |
7 | ➜ | 1/A/296:301 | NA |
8 | ➜ | 1/A/320:333 | NA |
9 | ➜ | 1/A/341:348 | NA |
10 | ➜ | 1/A/378:385 | NA |
11 | ➜ | 1/A/419:424 | NA |
12 | ➜ | 1/A/459:473 | NA |
13 | ➜ | 1/A/522:527 | NA |
14 | ➜ | 1/A/617:623 | NA |
15 | ➜ | 1/A/689:698 | NA |
16 | ➜ | 1/A/726:731 | NA |
17 | ➜ | 1/A/786:796 | NA |
18 | ➜ | 1/A/840:846 | NA |
19 | ➜ | 1/A/862:867 | NA |
20 | ➜ | 1/A/897:902 | NA |
21 | ➜ | 1/A/963:972 | NA |
22 | ➜ | 1/A/1012:1017 | NA |
23 | ➜ | 1/A/1028:1033 | NA |
24 | ➜ | 1/A/1076:1081 | NA |
25 | ➜ | 1/A/1089:1096 | NA |
26 | ➜ | 1/A/1133:1141 | NA |
27 | ➜ | 1/A/1165:1171 | NA |
28 | ➜ | 1/A/1265:1270 | NA |
29 | ➜ | 1/A/1314:1323 | NA |
30 | ➜ | 1/A/1356:1366 | NA |
31 | ➜ | 1/A/1448:1455 | NA |
32 | ➜ | 1/A/1515:1520 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/46:52,1/A/359:367,1/A/393:395 | NA |
2 | ➜ | 1/A/826:830,1/A/856:861,1/A/868:874 | NA |
3 | ➜ | 1/A/936:939,1/A/1344:1350,1/A/1372:1379 | NA |
4 | ➜ | 1/A/943:947,1/A/1234:1237,1/A/1337:1340 | NA |
5 | ➜ | 1/A/953:962,1/A/973:984,1/A/1221:1228 | NA |
6 | ➜ | 1/A/990:993,1/A/1045:1047,1/A/1210:1215 | NA |
7 | ➜ | 1/A/1002:1006,1/A/1023:1027,1/A/1034:1038 | NA |
8 | ➜ | 1/A/1061:1068,1/A/1107:1113,1/A/1187:1195 | NA |
9 | ➜ | 1/A/1116:1119,1/A/1154:1158,1/A/1181:1184 | NA |
10 | ➜ | 1/A/1237:1241,1/A/1296:1303,1/A/1334:1337 | NA |
11 | ➜ | 1/A/586:588,1/A/651:654,1/A/754:755 | NA |
12 | ➜ | 1/A/672:673,1/A/717:725,1/A/732:734 | NA |
13 | ➜ | 1/A/1073:1074,1/A/1083:1087,1/A/1098:1102 | NA |
Problematic loops
No problematic loops
Coloring options: