3JAI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JAI_001 | 1/2/12:23 | No text annotation Not in a motif group | ||
| HL_3JAI_002 | 1/2/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_97724.2 | |
| HL_3JAI_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3ZGZ_003 HL_33239.17 | |
| HL_3JAI_004 | 1/3/13:22 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_3JAI_005 | 1/3/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_2AZX_005 HL_97724.2 | |
| HL_3JAI_006 | 1/3/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_33239.17 | |
| HL_3JAI_007 | 1/5/37:44 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_23481.5 | |
| HL_3JAI_008 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_3JAI_009 | 1/5/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_3JAI_010 | 1/5/131:137 | No text annotation Not in a motif group | ||
| HL_3JAI_011 | 1/5/204:211 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_3JAI_012 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_3JAI_013 | 1/5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_3JAI_014 | 1/5/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_54035.7 | |
| HL_3JAI_015 | 1/5/314:323 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_17926.5 | |
| HL_3JAI_016 | 1/5/368:373 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_3JAI_017 | 1/5/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_3JAI_018 | 1/5/1178:1183 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_43074.18 | |
| HL_3JAI_019 | 1/5/1252:1258 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_68304.6 | |
| HL_3JAI_020 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_3JAI_021 | 1/5/1364:1373 | No text annotation Not in a motif group | ||
| HL_3JAI_022 | 1/5/1389:1394 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_3JAI_023 | 1/5/1406:1411 | No text annotation Not in a motif group | ||
| HL_3JAI_024 | 1/5/1436:1448 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_3JAI_025 | 1/5/1479:1486 | Other HL Not in a motif group | geometric HL_5J7L_200 HL_96776.3 | |
| HL_3JAI_026 | 1/5/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_3JAI_027 | 1/5/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.5 | |
| HL_3JAI_028 | 1/5/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_3JAI_029 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_3JAI_030 | 1/5/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_43074.18 | |
| HL_3JAI_031 | 1/5/1814:1823 | No text annotation Not in a motif group | ||
| HL_3JAI_032 | 1/5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_3JAI_033 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_3JAI_034 | 1/5/1978:1988 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_92304.3 | |
| HL_3JAI_035 | 1/5/2006:2013 | No text annotation Not in a motif group | geometric HL_5FMZ_001 HL_35894.3 | |
| HL_3JAI_036 | 1/5/2130:2244 | No text annotation Not in a motif group | ||
| HL_3JAI_037 | 1/5/2317:2322 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_3JAI_038 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_3JAI_039 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_3JAI_040 | 1/5/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_3JAI_041 | 1/5/2487:2491 | No text annotation Not in a motif group | ||
| HL_3JAI_042 | 1/5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_3JAI_043 | 1/5/2561:2566 | GNRA Not in a motif group | geometric HL_4QK9_002 HL_43074.18 | |
| HL_3JAI_044 | 1/5/2578:2583 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_3JAI_045 | 1/5/2623:2632 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_3JAI_046 | 1/5/2664:2670 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_00923.1 | |
| HL_3JAI_047 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_3JAI_048 | 1/5/2738:2742 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_3JAI_049 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_3JAI_050 | 1/5/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_3JAI_051 | 1/5/2872:2877 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_79299.11 | |
| HL_3JAI_052 | 1/5/3614:3618 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_3JAI_053 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_3JAI_054 | 1/5/3668:3674 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_3JAI_055 | 1/5/3723:3729 | No text annotation Not in a motif group | ||
| HL_3JAI_056 | 1/5/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_98248.1 | |
| HL_3JAI_057 | 1/5/3796:3804 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_3JAI_058 | 1/5/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_3JAI_059 | 1/5/3948:4065 | No text annotation Not in a motif group | ||
| HL_3JAI_060 | 1/5/4102:4107 | UNCG Not in a motif group | geometric HL_5J7L_171 HL_79299.11 | |
| HL_3JAI_061 | 1/5/4139:4145 | No text annotation Not in a motif group | ||
| HL_3JAI_062 | 1/5/4193:4201 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_3JAI_063 | 1/5/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_3JAI_064 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_3JAI_065 | 1/5/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_3JAI_066 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_14725.1 | |
| HL_3JAI_067 | 1/5/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_3JAI_068 | 1/5/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_16135.1 | |
| HL_3JAI_069 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_3JAI_070 | 1/5/4473:4481 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_93727.5 | |
| HL_3JAI_071 | 1/5/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_26055.6 | |
| HL_3JAI_072 | 1/5/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_3JAI_073 | 1/5/4603:4608 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_43074.18 | |
| HL_3JAI_074 | 1/5/4646:4651 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_3JAI_075 | 1/5/4688:4702 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_3JAI_076 | 1/5/4907:4914 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_3JAI_077 | 1/5/4975:4983 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_05018.6 | |
| HL_3JAI_078 | 1/5/5021:5028 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_16898.3 | |
| HL_3JAI_079 | 1/7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_02733.5 | |
| HL_3JAI_080 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 | |
| HL_3JAI_081 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_3JAI_083 | 1/8/107:112 | No text annotation Not in a motif group | ||
| HL_3JAI_084 | 1/8/121:129 | No text annotation Not in a motif group | ||
| HL_3JAI_085 | 1/9/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_67265.4 | |
| HL_3JAI_086 | 1/9/69:80 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_3JAI_087 | 1/9/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_43074.18 | |
| HL_3JAI_088 | 1/9/197:202 | GNRA Not in a motif group | geometric HL_6CZR_078 HL_43074.18 | |
| HL_3JAI_089 | 1/9/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_68493.6 | |
| HL_3JAI_090 | 1/9/322:329 | No text annotation Not in a motif group | ||
| HL_3JAI_091 | 1/9/377:387 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_55511.2 | |
| HL_3JAI_092 | 1/9/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_18785.1 | |
| HL_3JAI_093 | 1/9/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_22443.1 | |
| HL_3JAI_094 | 1/9/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_79299.11 | |
| HL_3JAI_095 | 1/9/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_50374.1 | |
| HL_3JAI_096 | 1/9/539:544 | GNRA Not in a motif group | geometric HL_5J7L_007 HL_43074.18 | |
| HL_3JAI_097 | 1/9/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_17086.2 | |
| HL_3JAI_098 | 1/9/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_43074.18 | |
| HL_3JAI_099 | 1/9/697:733 | No text annotation Not in a motif group | ||
| HL_3JAI_101 | 1/9/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_72066.1 | |
| HL_3JAI_102 | 1/9/833:841 | No text annotation Not in a motif group | ||
| HL_3JAI_103 | 1/9/885:901 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_03603.1 | |
| HL_3JAI_104 | 1/9/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_87219.4 | |
| HL_3JAI_105 | 1/9/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_43074.18 | |
| HL_3JAI_106 | 1/9/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_87219.4 | |
| HL_3JAI_107 | 1/9/1112:1121 | No text annotation Not in a motif group | ||
| HL_3JAI_108 | 1/9/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_43074.18 | |
| HL_3JAI_109 | 1/9/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_43074.18 | |
| HL_3JAI_110 | 1/9/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_96854.1 | |
| HL_3JAI_111 | 1/9/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_30819.1 | |
| HL_3JAI_112 | 1/9/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_43074.18 | |
| HL_3JAI_113 | 1/9/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_54035.7 | |
| HL_3JAI_114 | 1/9/1421:1426 | GNRA Not in a motif group | geometric HL_5FQ5_003 HL_43074.18 | |
| HL_3JAI_115 | 1/9/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_67216.5 | |
| HL_3JAI_116 | 1/9/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_43074.18 | |
| HL_3JAI_117 | 1/9/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_32458.3 | |
| HL_3JAI_118 | 1/9/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_01181.4 | |
| HL_3JAI_119 | 1/9/1760:1772 | No text annotation Not in a motif group | ||
| HL_3JAI_120 | 1/9/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JAI_082 | No text annotation | ||
| HL_3JAI_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JAI_001 | 1/2/2:4, 1/2/69:71 | No text annotation Not in a motif group | homologous IL_5EL4_357 NA | |
| IL_3JAI_002 | 1/5/6:7, 1/8/149:151 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.10 | |
| IL_3JAI_003 | 1/5/12:14, 1/8/143:144 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_3JAI_004 | 1/5/16:18, 1/8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_01312.13 | |
| IL_3JAI_005 | 1/5/26:27, 1/5/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_3JAI_006 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_61812.1 | |
| IL_3JAI_007 | 1/5/81:88, 1/5/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_3JAI_008 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases Not in a motif group | geometric IL_5WTK_001 IL_13730.12 | |
| IL_3JAI_009 | 1/5/121:122, 1/5/147:152 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.1 | |
| IL_3JAI_010 | 1/5/125:126, 1/5/142:144 | No text annotation Not in a motif group | ||
| IL_3JAI_011 | 1/5/168:173, 1/5/263:267 | No text annotation Not in a motif group | ||
| IL_3JAI_012 | 1/5/180:182, 1/5/255:256 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_04038.4 | |
| IL_3JAI_013 | 1/5/184:189, 1/5/252:253 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_13730.12 | |
| IL_3JAI_014 | 1/5/195:196, 1/5/244:246 | Single bulged C Not in a motif group | geometric IL_3D0U_001 IL_61258.10 | |
| IL_3JAI_015 | 1/5/199:201, 1/5/214:215 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_3JAI_016 | 1/5/339:342, 1/8/32:33 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_09061.4 | |
| IL_3JAI_017 | 1/5/348:350, 1/8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_3JAI_018 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.5 | |
| IL_3JAI_019 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.5 | |
| IL_3JAI_020 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | ||
| IL_3JAI_021 | 1/5/459:460, 1/5/695:697 | No text annotation Not in a motif group | ||
| IL_3JAI_022 | 1/5/462:464, 1/5/691:693 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_01312.13 | |
| IL_3JAI_023 | 1/5/465:466, 1/5/688:690 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_3JAI_024 | 1/5/466:472, 1/5/682:688 | No text annotation Not in a motif group | ||
| IL_3JAI_025 | 1/5/482:486, 1/5/670:672 | No text annotation Not in a motif group | ||
| IL_3JAI_026 | 1/5/488:490, 1/5/664:668 | No text annotation Not in a motif group | ||
| IL_3JAI_027 | 1/5/490:493, 1/5/661:664 | No text annotation Not in a motif group | ||
| IL_3JAI_028 | 1/5/495:496, 1/5/657:659 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_3JAI_029 | 1/5/497:499, 1/5/655:656 | No text annotation Not in a motif group | ||
| IL_3JAI_030 | 1/5/500:506, 1/5/652:654 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_87332.1 | |
| IL_3JAI_031 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_80007.16 | |
| IL_3JAI_032 | 1/5/511:515, 1/5/646:648 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_01312.13 | |
| IL_3JAI_033 | 1/5/708:709, 1/5/1287:1289 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_59137.10 | |
| IL_3JAI_034 | 1/5/722:724, 1/5/942:946 | No text annotation Not in a motif group | ||
| IL_3JAI_035 | 1/5/726:731, 1/5/938:940 | No text annotation Not in a motif group | ||
| IL_3JAI_036 | 1/5/731:735, 1/5/928:938 | No text annotation Not in a motif group | ||
| IL_3JAI_037 | 1/5/735:737, 1/5/927:928 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_3JAI_038 | 1/5/740:742, 1/5/922:924 | No text annotation Not in a motif group | geometric IL_4P43_004 IL_01312.13 | |
| IL_3JAI_039 | 1/5/745:753, 1/5/910:919 | No text annotation Not in a motif group | ||
| IL_3JAI_040 | 1/5/989:992, 1/5/1051:1064 | No text annotation Not in a motif group | ||
| IL_3JAI_041 | 1/5/1074:1076, 1/5/1235:1236 | No text annotation Not in a motif group | ||
| IL_3JAI_042 | 1/5/1076:1077, 1/5/1233:1235 | No text annotation Not in a motif group | ||
| IL_3JAI_043 | 1/5/1077:1079, 1/5/1221:1233 | No text annotation Not in a motif group | ||
| IL_3JAI_044 | 1/5/1081:1082, 1/5/1217:1219 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_06437.11 | |
| IL_3JAI_045 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation Not in a motif group | ||
| IL_3JAI_046 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.10 | |
| IL_3JAI_047 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_04038.4 | |
| IL_3JAI_048 | 1/5/1173:1175, 1/5/1186:1188 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_01312.13 | |
| IL_3JAI_049 | 1/5/1357:1360, 1/5/1378:1382 | No text annotation Not in a motif group | ||
| IL_3JAI_050 | 1/5/1360:1361, 1/5/1376:1378 | No text annotation Not in a motif group | ||
| IL_3JAI_051 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.1 | |
| IL_3JAI_052 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_4WF9_087 IL_09705.7 | |
| IL_3JAI_053 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_3JAI_054 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_04038.4 | |
| IL_3JAI_055 | 1/5/1520:1522, 1/5/1655:1657 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_01312.13 | |
| IL_3JAI_056 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.5 | |
| IL_3JAI_057 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_99645.1 | |
| IL_3JAI_058 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.6 | |
| IL_3JAI_059 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_3JAI_060 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.11 | |
| IL_3JAI_061 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_033 IL_90991.5 | |
| IL_3JAI_062 | 1/5/1671:1673, 1/5/1682:1684 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_01312.13 | |
| IL_3JAI_063 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation Not in a motif group | ||
| IL_3JAI_064 | 1/5/1694:1725, 1/5/1837:1842 | No text annotation Not in a motif group | ||
| IL_3JAI_065 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_89193.1 | |
| IL_3JAI_066 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_3JAI_067 | 1/5/1739:1744, 1/5/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_63596.4 | |
| IL_3JAI_068 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_85877.10 | |
| IL_3JAI_069 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_01312.13 | |
| IL_3JAI_070 | 1/5/1753:1756, 1/5/1775:1777 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_04038.4 | |
| IL_3JAI_071 | 1/5/1756:1758, 1/5/1774:1775 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_3JAI_072 | 1/5/1761:1763, 1/5/1769:1771 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_01312.13 | |
| IL_3JAI_073 | 1/5/1858:1860, 1/5/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_3JAI_074 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_3JAI_075 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.6 | |
| IL_3JAI_076 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation Not in a motif group | ||
| IL_3JAI_077 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_3JAI_078 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_17971.1 | |
| IL_3JAI_079 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | homologous IL_5TBW_052 IL_94878.1 | |
| IL_3JAI_080 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_3JAI_081 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.3 | |
| IL_3JAI_082 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation Not in a motif group | geometric IL_4V9F_043 IL_30542.1 | |
| IL_3JAI_083 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_95485.6 | |
| IL_3JAI_084 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged C Not in a motif group | geometric IL_3DIL_001 IL_61258.10 | |
| IL_3JAI_085 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_3JAI_086 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_3JAI_087 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_3JAI_088 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_3JAI_089 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_35110.5 | |
| IL_3JAI_090 | 1/5/2415:2419, 1/5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_63596.4 | |
| IL_3JAI_091 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_3JAI_092 | 1/5/2477:2479, 1/5/2499:2500 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_31836.1 | |
| IL_3JAI_093 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_55456.1 | |
| IL_3JAI_094 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.6 | |
| IL_3JAI_095 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A Not in a motif group | geometric IL_7A0S_012 IL_80007.16 | |
| IL_3JAI_096 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_72766.2 | |
| IL_3JAI_097 | 1/5/2622:2623, 1/5/2632:2634 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_3JAI_098 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.6 | |
| IL_3JAI_099 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_59137.10 | |
| IL_3JAI_100 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_76900.1 | |
| IL_3JAI_101 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_3JAI_102 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_79393.8 | |
| IL_3JAI_103 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.5 | |
| IL_3JAI_104 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_80663.10 | |
| IL_3JAI_105 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_98882.3 | |
| IL_3JAI_106 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_66584.5 | |
| IL_3JAI_107 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_3JAI_108 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_3JAI_109 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation Not in a motif group | ||
| IL_3JAI_110 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_80007.16 | |
| IL_3JAI_111 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_3JAI_112 | 1/5/3700:3703, 1/5/3749:3750 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_72766.2 | |
| IL_3JAI_113 | 1/5/3704:3705, 1/5/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_3JAI_114 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_3JAI_115 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation Not in a motif group | ||
| IL_3JAI_116 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.5 | |
| IL_3JAI_117 | 1/5/3722:3723, 1/5/3729:3731 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_3JAI_118 | 1/5/3780:3781, 1/5/3811:3814 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_69632.1 | |
| IL_3JAI_119 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_45481.1 | |
| IL_3JAI_120 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_3JAI_121 | 1/5/3900:3902, 1/5/4558:4561 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_86964.1 | |
| IL_3JAI_122 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.11 | |
| IL_3JAI_123 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_06437.11 | |
| IL_3JAI_124 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.6 | |
| IL_3JAI_125 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_98353.1 | |
| IL_3JAI_126 | 1/5/4095:4097, 1/5/4112:4113 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_3JAI_127 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_80007.16 | |
| IL_3JAI_128 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.6 | |
| IL_3JAI_129 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_80007.16 | |
| IL_3JAI_130 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_85877.10 | |
| IL_3JAI_131 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_04038.4 | |
| IL_3JAI_132 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_80663.10 | |
| IL_3JAI_133 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_05265.1 | |
| IL_3JAI_134 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_80663.10 | |
| IL_3JAI_135 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_07931.5 | |
| IL_3JAI_136 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_3JAI_137 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_80663.10 | |
| IL_3JAI_138 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_01312.13 | |
| IL_3JAI_139 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_13730.12 | |
| IL_3JAI_140 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_3JAI_141 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation Not in a motif group | ||
| IL_3JAI_142 | 1/5/4472:4473, 1/5/4481:4483 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_3JAI_143 | 1/5/4495:4497, 1/5/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_01312.13 | |
| IL_3JAI_144 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_80007.16 | |
| IL_3JAI_145 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation Not in a motif group | ||
| IL_3JAI_146 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.7 | |
| IL_3JAI_147 | 1/5/4590:4592, 1/5/4618:4620 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_01312.13 | |
| IL_3JAI_148 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.5 | |
| IL_3JAI_149 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_3JAI_150 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_3JAI_151 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_42589.6 | |
| IL_3JAI_152 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_3JAI_153 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_53523.5 | |
| IL_3JAI_154 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation Not in a motif group | ||
| IL_3JAI_155 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_85877.10 | |
| IL_3JAI_156 | 1/5/4755:4766, 1/5/4868:4878 | No text annotation Not in a motif group | ||
| IL_3JAI_157 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_85877.10 | |
| IL_3JAI_158 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_85877.10 | |
| IL_3JAI_159 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation Not in a motif group | ||
| IL_3JAI_160 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation Not in a motif group | ||
| IL_3JAI_161 | 1/5/4966:4968, 1/5/5065:5066 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_3JAI_162 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_85877.10 | |
| IL_3JAI_163 | 1/5/4992:4994, 1/5/5057:5059 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_01312.13 | |
| IL_3JAI_164 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.10 | |
| IL_3JAI_165 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_3JAI_166 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation Not in a motif group | ||
| IL_3JAI_167 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged U Not in a motif group | homologous IL_5TBW_134 IL_83039.11 | |
| IL_3JAI_168 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.7 | |
| IL_3JAI_169 | 1/7/15:16, 1/7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_3JAI_170 | 1/7/21:27, 1/7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_3JAI_171 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.4 | |
| IL_3JAI_172 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.5 | |
| IL_3JAI_173 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_3JAI_174 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_4Y1M_005 IL_01312.13 | |
| IL_3JAI_175 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_3JAI_176 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_55456.1 | |
| IL_3JAI_177 | 1/9/23:25, 1/9/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_01312.13 | |
| IL_3JAI_178 | 1/9/34:36, 1/9/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_01312.13 | |
| IL_3JAI_179 | 1/9/37:40, 1/9/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.7 | |
| IL_3JAI_180 | 1/9/41:47, 1/9/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_34626.4 | |
| IL_3JAI_181 | 1/9/49:51, 1/9/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_06437.11 | |
| IL_3JAI_182 | 1/9/57:62, 1/9/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_96451.1 | |
| IL_3JAI_183 | 1/9/63:68, 1/9/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_59423.1 | |
| IL_3JAI_184 | 1/9/108:110, 1/9/351:353 | UU cWW Not in a motif group | geometric IL_4TS2_004 IL_01312.13 | |
| IL_3JAI_185 | 1/9/110:112, 1/9/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_01312.13 | |
| IL_3JAI_186 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_13730.12 | |
| IL_3JAI_187 | 1/9/116:121, 1/9/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_76386.1 | |
| IL_3JAI_188 | 1/9/145:151, 1/9/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_92440.5 | |
| IL_3JAI_189 | 1/9/152:154, 1/9/164:166 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_003 IL_42589.6 | |
| IL_3JAI_190 | 1/9/188:192, 1/9/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.6 | |
| IL_3JAI_191 | 1/9/223:288, 1/9/295:298 | No text annotation Not in a motif group | ||
| IL_3JAI_192 | 1/9/317:321, 1/9/330:333 | No text annotation Not in a motif group | ||
| IL_3JAI_193 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_29549.9 | |
| IL_3JAI_194 | 1/9/366:371, 1/9/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_98882.3 | |
| IL_3JAI_195 | 1/9/411:413, 1/9/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_46732.1 | |
| IL_3JAI_196 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_42589.6 | |
| IL_3JAI_197 | 1/9/459:461, 1/9/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_01312.13 | |
| IL_3JAI_198 | 1/9/487:489, 1/9/511:512 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.11 | |
| IL_3JAI_199 | 1/9/491:495, 1/9/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_08376.2 | |
| IL_3JAI_200 | 1/9/495:496, 1/9/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_59137.10 | |
| IL_3JAI_201 | 1/9/528:530, 1/9/554:557 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_01312.13 | |
| IL_3JAI_202 | 1/9/535:537, 1/9/546:549 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_01312.13 | |
| IL_3JAI_203 | 1/9/566:569, 1/9/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_85877.10 | |
| IL_3JAI_204 | 1/9/599:608, 1/9/635:637 | No text annotation Not in a motif group | ||
| IL_3JAI_205 | 1/9/611:617, 1/9/624:632 | No text annotation Not in a motif group | ||
| IL_3JAI_206 | 1/9/663:665, 1/9/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_01312.13 | |
| IL_3JAI_207 | 1/9/665:671, 1/9/1161:1162 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_12418.1 | |
| IL_3JAI_208 | 1/9/673:675, 1/9/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 |