4D5L Summary
- Structure Title
- 4D5L Summary
- Authors
- Release Date
- 2015-02-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 9.0 Å
- Chains
-
- 1 RNA chain from Oryctolagus cuniculus
- 33 other chains
- Compounds
- 18S RRNA 2, 40S RIBOSOMAL PROTEIN ES26, 40S RIBOSOMAL PROTEIN ES27, 40S RIBOSOMAL PROTEIN ES28, 40S RIBOSOMAL PROTEIN US14, 40S RIBOSOMAL PROTEIN ES30, 40S RIBOSOMAL PROTEIN ES31, 40S RIBOSOMAL PROTEIN RACK1, 40S RIBOSOMAL PROTEIN ES7, 40S RIBOSOMAL PROTEIN ES8, 40S RIBOSOMAL PROTEIN US4, 40S RIBOSOMAL PROTEIN ES10, 40S RIBOSOMAL PROTEIN US17, 40S RIBOSOMAL PROTEIN ES12, 40S RIBOSOMAL PROTEIN US15, 40S RIBOSOMAL PROTEIN US11, 40S RIBOSOMAL PROTEIN US19, 40S RIBOSOMAL PROTEIN US9, 40S RIBOSOMAL PROTEIN ES17, 40S RIBOSOMAL PROTEIN US13, 40S RIBOSOMAL PROTEIN ES19, 40S RIBOSOMAL PROTEIN US10, 40S RIBOSOMAL PROTEIN ES21, 40S RIBOSOMAL PROTEIN US8, 40S RIBOSOMAL PROTEIN US12, 40S RIBOSOMAL PROTEIN ES24, 40S RIBOSOMAL PROTEIN ES25, 40S RIBOSOMAL PROTEIN US2, 40S RIBOSOMAL PROTEIN ES1, 40S RIBOSOMAL PROTEIN US5, 40S RIBOSOMAL PROTEIN US3, 40S RIBOSOMAL PROTEIN ES4, 40S RIBOSOMAL PROTEIN US7, 40S RIBOSOMAL PROTEIN ES6
Pairwise Interactions
Interactions annotated by FR3D:- 441 base-pairs
- 1,452 base-stacking
- 610 base-phosphate
- 97 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4D5L contains:- 82 internal loops from 0 motif groups
- 34 hairpin loops from 0 motif groups
- 10 three-way junctions
3D Redundancy
4D5L has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_21280.29 (1)
- NR_all_21280.29 (1)
Similar structures
4KZY 6R6G 5LZU 6HCF 7SYV 6R7Q 3JAH 5LZY 7SYN 7SYP 7SYQ 6HCJ 6MTB 5LZW 5LZX 6GZ3 7SYX 7SYW 7NWG 6GZ4 5LZT 6YAM 7NWH 5FLX 3JAG 5K0Y 6HCQ 6HCM 4UJE 3JAN 3JAJ 4UJD 4D61 7SYJ 7SYM 3JAI 7SYG 7SYK 7SYT 7SYI 7SYL 7SYU 7SYH 7SYO 4UJC 5LZZ 4KZZ 7NWI 6YAL 8BHF 6R5Q 7TOQ 7ZJX 7O81 6ZVK 6P5I 8P2K 7O80 4KZX 7O7Y 7OYD 7O7Z 7JQB 7ZJW 7UCK 6SGC 7TOR 6P5K 6P5J 7UCJ 5LZV 6D90 7SYS 8BTK 6YAN 6MTC 6MTE 6W2S 6GZ5 6MTD 7A01 6P4G 7MDZ 6R6P 6P4H 6P5N 6D9J 7JQC 5LZS 6W2T 7SYRStructures from NR_all_21280.29